id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 19183 Crash in swap_buffers chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.0-arm64-arm-64bit ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00000001fe368800 (most recent call first): File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 166 in status File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 98 in _expose_event File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 122 in make_current File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 555 in make_current File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 584 in use_shared_context File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 143 in render File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 113 in _redraw File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 149 in invoke File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 248 in _activate File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 217 in activate File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 393 in activate_trigger File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 100 in draw_new_frame File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 169 in update_graphics_now File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 153 in resizeEvent File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 61 in event File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 368 in event_loop File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1057 in init File ""/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1220 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, 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256K 1 \nAttributeGraph Data 1024K 1 \nColorSync 704K 33 \nCoreAnimation 10.7M 70 \nCoreGraphics 64K 4 \nCoreUI image data 1520K 19 \nFoundation 48K 2 \nKernel Alloc Once 48K 2 \nMALLOC 909.7M 219 \nMALLOC guard page 3408K 4 \nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 896K 56 \nStack 209.9M 57 \nStack Guard 56.0M 1 \nVM_ALLOCATE 176.1M 222 \nVM_ALLOCATE (reserved) 352.0M 1 reserved VM address space (unallocated)\n__AUTH 5692K 632 \n__AUTH_CONST 87.9M 1021 \n__CTF 824 1 \n__DATA 40.5M 1116 \n__DATA_CONST 42.4M 1163 \n__DATA_DIRTY 8723K 883 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 623.6M 138 \n__OBJC_RO 78.1M 1 \n__OBJC_RW 2561K 1 \n__TEXT 1.4G 1183 \n__TEXT (graphics) 528K 2 \n__TPRO_CONST 128K 2 \ndyld private memory 688K 7 \nmapped file 331.8M 58 \npage table in kernel 1554K 1 \nshared memory 3200K 29 \n=========== ======= ======= \nTOTAL 4.3G 6941 \nTOTAL, minus reserved VM space 4.0G 6941 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"" } }, ""logWritingSignature"" : ""3e757471afe775bda087e5440f62b71f0a230259"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""68095e8ecb2a9d1eaa8463c9"", ""factorPackIds"" : [ ""68bf4eacb556ea03e19aed49"" ], ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""67d07cd6a7affa169ae21f45"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000002 } ], ""experiments"" : [ { ""treatmentId"" : ""28060e10-d4e5-4163-aa2b-d8bd088d5cbf"", ""experimentId"" : ""6685b283afc7c17197d69eec"", ""deploymentId"" : 400000012 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.10.1 (2025-07-24) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 7mq8 Summary of feedback from opening 7mq8 fetched from pdb --- notes | Fetching compressed mmCIF 7mq8 from http://files.rcsb.org/download/7mq8.cif Fetching CCD ATP from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/P/ATP/ATP.cif Fetching CCD GTP from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/P/GTP/GTP.cif Fetching CCD MG from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/MG/MG.cif Fetching CCD SAH from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/H/SAH/SAH.cif Fetching CCD ZN from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/N/ZN/ZN.cif 7mq8 title: Cryo-EM structure of the human SSU processome, state pre-A1 [more info...] Chain information for 7mq8 #1 --- Chain | Description | UniProt L0 | 5'ETS rRNA | L1 | 18S rRNA | L2 | U3 snoRNA | L3 | 40S ribosomal protein S18 | L4 | 40S ribosomal protein S4, X isoform | RS4X_HUMAN 1-263 L5 | 40S ribosomal protein S5 | RS5_HUMAN 1-204 L6 | 40S ribosomal protein S6 | RS6_HUMAN 1-249 L7 | 40S ribosomal protein S7 | RS7_HUMAN 1-194 L8 | 40S ribosomal protein S8 | RS8_HUMAN 1-208 L9 | 40S ribosomal protein S9 | RS9_HUMAN 1-194 LA | 40S ribosomal protein S12 | RS12_HUMAN 1-132 LC | 40S ribosomal protein S16 | RS16_HUMAN 1-146 LD | 40S ribosomal protein S11 | RS11_HUMAN 1-158 LF | 40S ribosomal protein S24 | RS24_HUMAN 1-133 LG | 40S ribosomal protein S28 | RS28_HUMAN 1-69 LH | WD repeat-containing protein 75 | WDR75_HUMAN 1-830 LI | Nucleolar protein 11 | LJ | U3 small nucleolar RNA-associated protein 15 homolog | UTP15_HUMAN 1-518 LK LL | WD repeat-containing protein 43 | WDR43_HUMAN 1-677 LM | HEAT repeat-containing protein 1 | HEAT1_HUMAN 1-2144 LN | U3 small nucleolar RNA-associated protein 4 homolog | UTP4_HUMAN 1-686 LO | Periodic tryptophan protein 2 homolog | PWP2_HUMAN 1-919 LP | U3 small nucleolar RNA-associated protein 6 homolog | UTP6_HUMAN 1-597 LQ | WD repeat-containing protein 3 | WDR3_HUMAN 1-943 LR | Transducin beta-like protein 3 | TBL3_HUMAN 1-808 LS | U3 small nucleolar RNA-associated protein 18 homolog | UTP18_HUMAN 1-556 LT | WD repeat-containing protein 36 | WDR36_HUMAN 1-951 LU | DDB1- and CUL4-associated factor 13 | DCA13_HUMAN 1-445 LW | WD repeat-containing protein 46 | WDR46_HUMAN 1-610 LZ | U3 small nucleolar ribonucleoprotein protein IMP3 | IMP3_HUMAN 1-184 N0 | 5'ETS rRNA | NA | U3 small nucleolar ribonucleoprotein protein MPP10 | MPP10_HUMAN 1-681 NB | Something about silencing protein 10 | SAS10_HUMAN 1-479 NC | Neuroguidin | NGDN_HUMAN 1-315 ND | Nucleolar protein 7 | NOL7_HUMAN 1-257 NE | Uncharacterized protein C1orf131 | CA131_HUMAN 1-293 NF | 40S ribosomal protein S13 | RS13_HUMAN 1-151 NG | 40S ribosomal protein S14 | RS14_HUMAN 1-151 NH | Nucleolar protein 6 | NOL6_HUMAN 1-1146 NI | Ribosomal RNA-processing protein 7 homolog A | RRP7A_HUMAN 1-280 NJ NK | RNA cytidine acetyltransferase | NAT10_HUMAN 1-1025 NM | 40S ribosomal protein S3a | RS3A_HUMAN 1-264 NN | Protein AATF | AATF_HUMAN 1-560 NO | 40S ribosomal protein S15a | RS15A_HUMAN 1-130 NQ | 40S ribosomal protein S27 | RS27_HUMAN 1-84 NR | RRP12-like protein | NT | Ubiquitin-40S ribosomal protein S27a | NU | 40S ribosomal protein S17 | RS17_HUMAN 1-135 NW | Nucleolar protein 10 | NOL10_HUMAN 1-688 NY | KRR1 small subunit processome component homolog | KRR1_HUMAN 1-381 SA | Nucleolar protein 56 | NOP56_HUMAN 1-594 SB | Nucleolar protein 58 | NOP58_HUMAN 1-529 SC SD | rRNA 2'-O-methyltransferase fibrillarin | FBRL_HUMAN 1-321 SE SF | NHP2-like protein 1 | NH2L1_HUMAN 1-128 SG | U3 small nucleolar RNA-interacting protein 2 | U3IP2_HUMAN 1-475 SH | RNA 3'-terminal phosphate cyclase-like protein | RCL1_HUMAN 1-373 SI | Ribosome biogenesis protein BMS1 homolog | SJ SK | Ribosomal RNA small subunit methyltransferase NEP1 | NEP1_HUMAN 1-244 SL | rRNA-processing protein FCF1 homolog | FCF1_HUMAN 1-198 SM | U3 small nucleolar ribonucleoprotein protein IMP4 | IMP4_HUMAN 1-291 SP | Small subunit processome component 20 homolog | UTP20_HUMAN 1-2785 SQ | Deoxynucleotidyltransferase terminal-interacting protein 2 | TDIF2_HUMAN 1-756 SR | 40S ribosomal protein S23 | RS23_HUMAN 1-143 SS | U3 small nucleolar RNA-associated protein 14 homolog A | UT14A_HUMAN 1-771 ST | Nucleolar protein 14 | SU | Nucleolar complex protein 4 homolog | SW | RNA-binding protein PNO1 | PNO1_HUMAN 1-252 SX | Unassigned peptides | SY | Probable U3 small nucleolar RNA-associated protein 11 | UTP11_HUMAN 1-253 SZ | Bystin | Sx | Unassigned peptide | Non-standard residues in 7mq8 #1 --- ATP — adenosine-5'-triphosphate GTP — guanosine-5'-triphosphate MG — magnesium ion SAH — S-adenosyl-L-homocysteine ZN — zinc ion 4 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > color bychain > show cartoons > hide atoms > sequence chain #1/L1 Alignment identifier is 1/L1 > color L1 red Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color L1 redsel L1 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > select L1 Expected an objects specifier or a keyword > select /L1:2-1860 27777 atoms, 31039 bonds, 1111 pseudobonds, 1301 residues, 3 models selected > color sel red > select clear > sequence chain #1/L1 Destroying pre-existing alignment with identifier 1/L1 Alignment identifier is 1/L1 > select /L1:2-1860 27777 atoms, 31039 bonds, 1111 pseudobonds, 1301 residues, 3 models selected > select \ L1:1 Expected an objects specifier or a keyword > select \L1:1 Expected an objects specifier or a keyword > select /L1:1 Nothing selected > view sel No objects specified. > sequence chain #1/L1 Destroying pre-existing alignment with identifier 1/L1 Alignment identifier is 1/L1 > select /L1:2-1860 27777 atoms, 31039 bonds, 1111 pseudobonds, 1301 residues, 3 models selected > select /L1:2 22 atoms, 24 bonds, 1 residue, 1 model selected > view sel > ui tool show ""Side View"" > select /L1 27796 atoms, 31039 bonds, 1114 pseudobonds, 1320 residues, 4 models selected > select ~sel 217318 atoms, 222393 bonds, 490 pseudobonds, 27124 residues, 4 models selected > hide sel cartoons > select /L1:2 22 atoms, 24 bonds, 1 residue, 1 model selected > select /L1:2-665 12740 atoms, 14233 bonds, 461 pseudobonds, 598 residues, 3 models selected ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.10.1 (2025-07-24) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M4 Max OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: Mac Studio Model Identifier: Mac16,9 Model Number: MU963LL/A Chip: Apple M4 Max Total Number of Cores: 14 (10 performance and 4 efficiency) Memory: 36 GB System Firmware Version: 13822.1.2 OS Loader Version: 13822.1.2 Software: System Software Overview: System Version: macOS 26.0 (25A354) Kernel Version: Darwin 25.0.0 Time since boot: 3 days, 58 minutes Graphics/Displays: Apple M4 Max: Chipset Model: Apple M4 Max Type: GPU Bus: Built-In Total Number of Cores: 32 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: LG HDR 4K: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 3840 x 2160 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.6.1 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.4 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.7 ChimeraX-AtomicLibrary: 14.1.19 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.3 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.10.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.15 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.59.0 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.3.2 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.1 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 }}} " defect closed normal Graphics duplicate all ChimeraX