id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 18874 Crash in swap_buffers chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.0-arm64-arm-64bit ChimeraX Version: 1.11.dev202507041857 (2025-07-04 18:57:15 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x0000000203990800 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 166 in status File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 98 in _expose_event File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 122 in make_current File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 555 in make_current File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 584 in use_shared_context File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 143 in render File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 113 in _redraw File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 149 in invoke File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 248 in _activate File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 217 in activate File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 393 in activate_trigger File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 100 in draw_new_frame File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 169 in update_graphics_now File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 153 in resizeEvent File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 61 in event File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 368 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1058 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1223 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, 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All rights reserved. How to cite UCSF ChimeraX > open 8eW6 8ew6 title: Anti-human CD8 VHH complex with CD8 α [more info...] Chain information for 8ew6 #1 --- Chain | Description | UniProt V | Anti-CD8 alpha VHH | W | T-cell surface glycoprotein CD8 alpha chain | CD8A_HUMAN 1-120 8ew6 mmCIF Assemblies --- 1| author_and_software_defined_assembly 32 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. 1768 atoms have anisotropic B-factors. Depict anisotropic information with Thermal Ellipsoids [start tool...] or the aniso command. > ui tool show ""Show Sequence Viewer"" > sequence chain /V Alignment identifier is 1/V > lighting soft > set bgColor white > select clear > select /V:1-123 913 atoms, 937 bonds, 123 residues, 1 model selected > color sel cornflower blue > select /V:1-2 12 atoms, 11 bonds, 2 residues, 1 model selected > select /V:1-3 21 atoms, 20 bonds, 3 residues, 1 model selected > select /V:8-9 8 atoms, 7 bonds, 2 residues, 1 model selected > select /V:8-11 20 atoms, 19 bonds, 4 residues, 1 model selected > select /V:15 4 atoms, 3 bonds, 1 residue, 1 model selected > select /V:15-23 58 atoms, 57 bonds, 9 residues, 1 model selected > select /V:27 11 atoms, 11 bonds, 1 residue, 1 model selected > select /V:26 4 atoms, 3 bonds, 1 residue, 1 model selected > select /V:26 4 atoms, 3 bonds, 1 residue, 1 model selected > select /V:23 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:23-29 49 atoms, 50 bonds, 7 residues, 1 model selected > select /V:23-29 49 atoms, 50 bonds, 7 residues, 1 model selected > select /V:32 12 atoms, 12 bonds, 1 residue, 1 model selected > select /V:25-32 67 atoms, 69 bonds, 8 residues, 1 model selected > color sel forest green > select /V:55 8 atoms, 7 bonds, 1 residue, 1 model selected > select /V:53 8 atoms, 7 bonds, 1 residue, 1 model selected > select /V:53-56 38 atoms, 38 bonds, 4 residues, 1 model selected > color sel forest green > select /V:102 14 atoms, 15 bonds, 1 residue, 1 model selected > select /V:100-101 17 atoms, 17 bonds, 2 residues, 1 model selected > select /V:100-105 49 atoms, 51 bonds, 6 residues, 1 model selected > color sel forest green > surface sel > select clear > select /V:1-123 913 atoms, 937 bonds, 123 residues, 1 model selected > surface hidePatches (#!1 & sel) > surface (#!1 & sel) > select /V:52@CD 1 atom, 1 residue, 1 model selected > select /V:49-50 14 atoms, 13 bonds, 2 residues, 1 model selected > select /V:49-56 71 atoms, 71 bonds, 8 residues, 1 model selected > select /V:50-51 14 atoms, 13 bonds, 2 residues, 1 model selected > select /V:50-56 63 atoms, 63 bonds, 7 residues, 1 model selected > select /V:52 11 atoms, 10 bonds, 1 residue, 1 model selected > select /V:52-56 49 atoms, 49 bonds, 5 residues, 1 model selected > select /V:52 11 atoms, 10 bonds, 1 residue, 1 model selected > select /V:52-55 38 atoms, 38 bonds, 4 residues, 1 model selected > color (#!1 & sel) forest green > select /V:99@O 1 atom, 1 residue, 1 model selected > select /V:96 6 atoms, 5 bonds, 1 residue, 1 model selected > select /V:96-99 20 atoms, 19 bonds, 4 residues, 1 model selected > select /V:33@N 1 atom, 1 residue, 1 model selected > select /V:28 7 atoms, 6 bonds, 1 residue, 1 model selected > select /V:28-33 51 atoms, 52 bonds, 6 residues, 1 model selected > color (#!1 & sel) forest green > select /V:28-31,62-65,87-91,100-105 145 atoms, 146 bonds, 19 residues, 1 model selected > select /V:100-101 17 atoms, 17 bonds, 2 residues, 1 model selected > select /V:100-101 17 atoms, 17 bonds, 2 residues, 1 model selected > select /V:96 6 atoms, 5 bonds, 1 residue, 1 model selected > select /V:96-101 37 atoms, 37 bonds, 6 residues, 1 model selected > select /V:55@OD2 1 atom, 1 residue, 1 model selected > select /V:51 8 atoms, 7 bonds, 1 residue, 1 model selected > select /V:51-56 57 atoms, 57 bonds, 6 residues, 1 model selected > select /V:49 8 atoms, 7 bonds, 1 residue, 1 model selected > select /V:49-56 71 atoms, 71 bonds, 8 residues, 1 model selected > select /V:52-53 19 atoms, 18 bonds, 2 residues, 1 model selected > select /V:52-60 84 atoms, 86 bonds, 9 residues, 1 model selected > select /V:54-55 19 atoms, 19 bonds, 2 residues, 1 model selected > select /V:54-57 40 atoms, 41 bonds, 4 residues, 1 model selected > select /V:55 8 atoms, 7 bonds, 1 residue, 1 model selected > select /V:54-55 19 atoms, 19 bonds, 2 residues, 1 model selected > select /V:52 11 atoms, 10 bonds, 1 residue, 1 model selected > select /V:52-55 38 atoms, 38 bonds, 4 residues, 1 model selected > select /V:50 6 atoms, 5 bonds, 1 residue, 1 model selected > select /V:50-51 14 atoms, 13 bonds, 2 residues, 1 model selected > select /V:48 7 atoms, 6 bonds, 1 residue, 1 model selected > select /V:48-55 67 atoms, 67 bonds, 8 residues, 1 model selected > select /V:52-53 19 atoms, 18 bonds, 2 residues, 1 model selected > select /V:52-55 38 atoms, 38 bonds, 4 residues, 1 model selected > select /V:28 7 atoms, 6 bonds, 1 residue, 1 model selected > select /V:28-33 51 atoms, 52 bonds, 6 residues, 1 model selected > select /V:52 11 atoms, 10 bonds, 1 residue, 1 model selected > select /V:52-55 38 atoms, 38 bonds, 4 residues, 1 model selected > select /V:52 11 atoms, 10 bonds, 1 residue, 1 model selected > select /V:52-55 38 atoms, 38 bonds, 4 residues, 1 model selected > select /V:28-29 18 atoms, 18 bonds, 2 residues, 1 model selected > select /V:28-32 46 atoms, 47 bonds, 5 residues, 1 model selected > select /V:100@CB 1 atom, 1 residue, 1 model selected > select /V:100 6 atoms, 5 bonds, 1 residue, 1 model selected > select /V:100-105 49 atoms, 51 bonds, 6 residues, 1 model selected > select /V:104 6 atoms, 5 bonds, 1 residue, 1 model selected > select /V:100-104 42 atoms, 44 bonds, 5 residues, 1 model selected > color (#!1 & sel) forest green > select /V:103 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:103-104 11 atoms, 10 bonds, 2 residues, 1 model selected > color (#!1 & sel) red > select /V:99@O 1 atom, 1 residue, 1 model selected > select /V:97-98 10 atoms, 9 bonds, 2 residues, 1 model selected > select /V:97-99 14 atoms, 13 bonds, 3 residues, 1 model selected > select /V:95 12 atoms, 12 bonds, 1 residue, 1 model selected > select /V:95-99 32 atoms, 32 bonds, 5 residues, 1 model selected > select /V:98-99 9 atoms, 8 bonds, 2 residues, 1 model selected > select /V:98-99 9 atoms, 8 bonds, 2 residues, 1 model selected > select /V:28-31,62-65,87-91,100-105 145 atoms, 146 bonds, 19 residues, 1 model selected > select /V:98 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:98-99 9 atoms, 8 bonds, 2 residues, 1 model selected > select /V:97 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:97-98 10 atoms, 9 bonds, 2 residues, 1 model selected > select /V:99 4 atoms, 3 bonds, 1 residue, 1 model selected > select /V:99 4 atoms, 3 bonds, 1 residue, 1 model selected > color (#!1 & sel) forest green > select /V:110@O 1 atom, 1 residue, 1 model selected > select /V:110 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:110-113 33 atoms, 33 bonds, 4 residues, 1 model selected > color (#!1 & sel) forest green > select /V:103 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:103 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:110 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:110 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:110 5 atoms, 4 bonds, 1 residue, 1 model selected > color (#!1 & sel) red > select /V:110 5 atoms, 4 bonds, 1 residue, 1 model selected > select /V:110 5 atoms, 4 bonds, 1 residue, 1 model selected > select clear > select /V:110@CB 1 atom, 1 residue, 1 model selected > select /W:54 9 atoms, 8 bonds, 1 residue, 1 model selected > select /V 946 atoms, 937 bonds, 156 residues, 1 model selected > select /W 903 atoms, 879 bonds, 1 pseudobond, 155 residues, 2 models selected > surface (#!1 & sel) > select /W:55@ND2 1 atom, 1 residue, 1 model selected > ui tool show ""Show Sequence Viewer"" > sequence chain /W Alignment identifier is 1/W > select /W:53 6 atoms, 5 bonds, 1 residue, 1 model selected > select /W:53-56 32 atoms, 31 bonds, 4 residues, 1 model selected > select /W:55 8 atoms, 7 bonds, 1 residue, 1 model selected > select /W:55-56 17 atoms, 16 bonds, 2 residues, 1 model selected > select /W:53 6 atoms, 5 bonds, 1 residue, 1 model selected > select /W:53-54 15 atoms, 14 bonds, 2 residues, 1 model selected > select /W:53-54 15 atoms, 14 bonds, 2 residues, 1 model selected > select /W:53-55 23 atoms, 22 bonds, 3 residues, 1 model selected > color (#!1 & sel) lime > color (#!1 & sel) purple > show (#!1 & sel-residues & sidechain) target ab > surface hidePatches (#!1 & sel) > select /V:110@CB 1 atom, 1 residue, 1 model selected > select /V:103@CB 1 atom, 1 residue, 1 model selected > surface hidePatches (#!1 & sel) > select /V:110@CB 1 atom, 1 residue, 1 model selected > select /V:103 5 atoms, 4 bonds, 1 residue, 1 model selected > show (#!1 & sel-residues & sidechain) target ab > select /V:110@CB 1 atom, 1 residue, 1 model selected > show (#!1 & sel-residues & sidechain) target ab > surface hidePatches (#!1 & sel) > select /W:73 8 atoms, 7 bonds, 1 residue, 1 model selected > select /W 903 atoms, 879 bonds, 1 pseudobond, 155 residues, 2 models selected > surface hidePatches (#!1 & sel) > select /V:103@CB 1 atom, 1 residue, 1 model selected > measure sasa Solvent accessible area for all atoms (1849 atoms) = 11644 > select /V:28 7 atoms, 6 bonds, 1 residue, 1 model selected > select /V:28-32 46 atoms, 47 bonds, 5 residues, 1 model selected > select /V:52 11 atoms, 10 bonds, 1 residue, 1 model selected > select /V:52-55 38 atoms, 38 bonds, 4 residues, 1 model selected > select /V 946 atoms, 937 bonds, 156 residues, 1 model selected > surface (#!1 & sel) fromIccProfile: Failed to parse description > stop fromIccProfile: Failed to parse description > surface hidePatches (#!1 & sel) fromIccProfile: Failed to parse description > select clear fromIccProfile: Failed to parse description > select /V:103 5 atoms, 4 bonds, 1 residue, 1 model selected fromIccProfile: Failed to parse description > select /V:99 4 atoms, 3 bonds, 1 residue, 1 model selected fromIccProfile: Failed to parse description > select /V:99-113 113 atoms, 117 bonds, 15 residues, 1 model selected fromIccProfile: Failed to parse description > color (#!1 & sel) magenta fromIccProfile: Failed to parse description > select /V:103 5 atoms, 4 bonds, 1 residue, 1 model selected fromIccProfile: Failed to parse description > select /V:104 6 atoms, 5 bonds, 1 residue, 1 model selected fromIccProfile: Failed to parse description > select /V:104 6 atoms, 5 bonds, 1 residue, 1 model selected fromIccProfile: Failed to parse description > select /V:103 5 atoms, 4 bonds, 1 residue, 1 model selected fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > undo fromIccProfile: Failed to parse description > select /V:103 5 atoms, 4 bonds, 1 residue, 1 model selected fromIccProfile: Failed to parse description > select /V 946 atoms, 937 bonds, 156 residues, 1 model selected fromIccProfile: Failed to parse description > surface (#!1 & sel) fromIccProfile: Failed to parse description > select /W 903 atoms, 879 bonds, 1 pseudobond, 155 residues, 2 models selected fromIccProfile: Failed to parse description > surface (#!1 & sel) fromIccProfile: Failed to parse description > ui tool show ""Side View"" fromIccProfile: Failed to parse description > cartoon hide (#!1 & sel) fromIccProfile: Failed to parse description Desktop color scheme is dark Desktop color scheme is light ===== Log before crash end ===== Log: Startup Messages --- warnings | fromIccProfile: Failed to parse description fromIccProfile: Failed to parse description fromIccProfile: Failed to parse description UCSF ChimeraX version: 1.11.dev202507041857 (2025-07-04) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX fromIccProfile: Failed to parse description [Repeated 227 time(s)] OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M2 Pro OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,9 Model Number: MPHE3LL/A Chip: Apple M2 Pro Total Number of Cores: 10 (6 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 13822.1.2 OS Loader Version: 13822.1.2 Software: System Software Overview: System Version: macOS 26.0 (25A354) Kernel Version: Darwin 25.0.0 Time since boot: 3 days, 6 hours, 51 minutes Graphics/Displays: Apple M2 Pro: Chipset Model: Apple M2 Pro Type: GPU Bus: Built-In Total Number of Cores: 16 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: Display: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 30.00Hz Main Display: Yes Mirror: On Mirror Status: Master Mirror Online: Yes Rotation: Supported Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Mirror: On Mirror Status: Hardware Mirror Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.4.1 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.5.1 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.0 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.3.1 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.10 ChimeraX-AtomicLibrary: 14.1.20 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.dev202507041857 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.2 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.12.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.0 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.21 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.3 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.4 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.2 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.46.3 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 0.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.9.2 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.14 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.58.5 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.4.4 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.32 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.1 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 }}} " defect closed normal Graphics can't reproduce all ChimeraX