id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1868 Error switching to volume plane style with multichannel data goddard@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.9 (2019-04-17) Description Showing brightfield channel of Allen Institute 9 channel data set, which is channel 4 and is not initially shown, and trying to switch to plane display style gives this error. Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' UCSF ChimeraX version: 0.9 (2019-04-17) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/goddard/Downloads/chimerax_microscopy/AICS-10_136.ome.tiff Summary of feedback from opening /Users/goddard/Downloads/chimerax_microscopy/AICS-10_136.ome.tiff --- notes | image name 3500000510_100X_20170131_E05_P03.czi #1, dimension order XYCZT, grid spacing 0.1083, 0.1083, 0.29, grid size 512, 512, 42, times 1, channels 9, value type uint16 Opened multi-channel map AICS-10_136.ome.tiff, 9 channels, grid size 512,512,42, pixel 0.108,0.108,0.29, shown at step 1, values uint16 Traceback (most recent call last): File ""/Users/goddard/Desktop/ChimeraX Apr 17 2019.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume_viewer.py"", line 1859, in sm.addAction(style, lambda s=style: self.representation_changed_cb(s)) File ""/Users/goddard/Desktop/ChimeraX Apr 17 2019.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume_viewer.py"", line 2375, in representation_changed_cb self.set_map_style(v, style) File ""/Users/goddard/Desktop/ChimeraX Apr 17 2019.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume_viewer.py"", line 2413, in set_map_style self.show_plane(True) File ""/Users/goddard/Desktop/ChimeraX Apr 17 2019.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume_viewer.py"", line 1970, in show_plane self.show_one_plane(v, show_volume) File ""/Users/goddard/Desktop/ChimeraX Apr 17 2019.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume_viewer.py"", line 1982, in show_one_plane self._update_plane(k, axis = axis) File ""/Users/goddard/Desktop/ChimeraX Apr 17 2019.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume_viewer.py"", line 2059, in _update_plane self._planes_spinbox.setValue(k) AttributeError: 'Histogram_Pane' object has no attribute '_planes_spinbox' AttributeError: 'Histogram_Pane' object has no attribute '_planes_spinbox' File ""/Users/goddard/Desktop/ChimeraX Apr 17 2019.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/volume_viewer.py"", line 2059, in _update_plane self._planes_spinbox.setValue(k) See log for complete Python traceback. OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102 OpenGL renderer: NVIDIA GeForce GT 650M OpenGL Engine OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Volume Data fixed all ChimeraX