id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17558 Crash moving window between screens chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.4.1-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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""factorPackIds"" : { }, ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""60f8ddccefea4203d95cbeef"", ""factorPackIds"" : { }, ""deploymentId"" : 240000025 } ], ""experiments"" : [ { ""treatmentId"" : ""ccf01f2d-382e-4ccc-a332-b3f688bc9bbf"", ""experimentId"" : ""67f46b1a73932228c9baf274"", ""deploymentId"" : 400000001 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/suxining/Downloads/8wix.pdb1 8wix.pdb1 title: Cryo-em structure of alligator haemoglobin In carbonmonoxy form [more info...] Chain information for 8wix.pdb1 --- Chain | Description 1.1/A | No description available 1.2/A | No description available 1.1/B 1.2/B | No description available > info chains chain id #1.1/A chain_id A chain id #1.1/B chain_id B chain id #1.2/A chain_id A chain id #1.2/B chain_id B > set bgColor white > preset cartoons/nucleotides cylinders/stubs Using preset: Cartoons/Nucleotides / Cylinders/Stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel mistyrose > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel thistle > color sel mediumturquoise > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel slateblue > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel aquamarine > color sel lightskyblue > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > color sel lightsteelblue > color sel thistle > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel plum > color sel lightcoral > color sel steelblue > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel plum > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel slateblue > color sel steelblue > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel seagreen > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > color sel mediumturquoise > color sel aquamarine > color sel palegreen > color #1.2 #7da977ff > color #1.2 #89b983ff > color #1.2 #6d9468ff > color #1.2 #9fd798ff > color #1.2 #8bd76cff > color #1.2 #9cd773ff > color #1.2 #9ad773ff > color #1.2 #8dd76cff > color #1.2 #89d772ff > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel cornflowerblue > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel tomato > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel seagreen > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > color sel goldenrod > select ligand 176 atoms, 188 bonds, 8 residues, 2 models selected > color byelement sel Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color sel byelement > preset cartoons/nucleotides licorice/ovals Using preset: Cartoons/Nucleotides / Licorice/Ovals Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh default arrows f x round width 1 thick 1 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides tube/slab shape ellipsoid > preset cartoons/nucleotides ribbons/slabs Using preset: Cartoons/Nucleotides / Ribbons/Slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel Medium Orchid Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color sel #BA55D3 > preset cartoons/nucleotides cylinders/stubs Using preset: Cartoons/Nucleotides / Cylinders/Stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > color sel #DA70D6 > color sel #FDE6F5 > color sel #DA70D6 > color sel #D494D4 > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel #3CB371 > color sel #9AD29A > color sel #7EB77E > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel #C6A77C > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > color sel lightsteelblue > color sel lightskyblue > color sel lsteelblue Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color sel steelblue > color #1.2 #628fb6ff > color #1.2 #618eb6ff > color #1.2 #6594beff > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel #C6A77C > lighting flat or adjust shininess 0. Expected a keyword > lighting flat or adjust shininess 0 Expected a keyword > select #8wix.pdb1 group Expected an objects specifier or a keyword > select 8wix.pdb1 group Expected an objects specifier or a keyword > select all 4980 atoms, 4880 bonds, 18 pseudobonds, 816 residues, 5 models selected > lighting soft or use ambient occlusion true Expected a keyword > set silhouettes true > set silhouetteWidth 2 > lighting flat > lighting soft > shininess 0 Unknown command: shininess 0 > set ambientOcclusion false Expected a keyword > set depthCue false Expected a keyword > select all 4980 atoms, 4880 bonds, 18 pseudobonds, 816 residues, 5 models selected > set depthCue false Expected a keyword > set ambientOcclusion false Expected a keyword > set shadows false Expected a keyword > show sel surfaces > hide sel surfaces > show sel cartoons > hide sel cartoons > show sel cartoons > show sel atoms > hide sel atoms > lighting simple > lighting soft > lighting full > lighting soft > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > lighting soft > lighting full > ui tool show ""Side View"" > set bgColor gray > set bgColor white > set bgColor black > set bgColor white > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting soft > lighting flat > lighting full > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel #C6A77C > show sel atoms > hide sel atoms > show ligand > select ligand 176 atoms, 188 bonds, 8 residues, 2 models selected > color sel byelement > label /A text α1 > label #1.1/A text α1 > hide label Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > label hide /A Expected one of 'atoms', 'bonds', 'models', 'pseudobonds', or 'residues' or a keyword > undo > redo > ui mousemode right label > label delete > label #1.1/A text α1 > label delete > label #1.1/B:3 > label #1.2/A:88 > label #1.2/A:96 > label delete > ui mousemode right label > label #1.2/A:37 > label delete > ui mousemode right translate > ui mousemode right select Drag select of 8 residues Drag select of 11 residues Drag select of 13 residues Drag select of 9 residues Drag select of 17 residues > save ""/Users/suxining/Desktop/Fig 1 A.cxs"" Drag select of 17 residues > ui mousemode right translate > label #1.1/A text α1 2dlabel create text ""α1 subunit"" xpos 0.2 ypos 0.8 > color hotpink Expected a keyword > save /Users/suxining/Desktop/HbAM_clean.png supersample 3 > ui mousemode right rotate > zoom Pixel size at center of rotation is 0.122 > zoom Pixel size at center of rotation is 0.119 > zoom Pixel size at center of rotation is 0.113 > zoom Pixel size at center of rotation is 0.113 > ui mousemode right translate > save /Users/suxining/Desktop/HbAM_clean.png supersample 3 > ui mousemode right select > ~select Nothing selected > save /Users/suxining/Desktop/HbAM_clean.png supersample 3 > open ""/Users/suxining/Desktop/Fig 1 A.cxs"" opened ChimeraX session Drag select of 12 residues Drag select of 4 atoms, 10 residues, 4 bonds Drag select of 6 residues ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. > open ""/Users/suxining/Desktop/Fig 1 A.cxs"" Log from Tue May 6 14:21:09 2025 Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/suxining/Downloads/8wix.pdb1 8wix.pdb1 title: Cryo-em structure of alligator haemoglobin In carbonmonoxy form [more info...] Chain information for 8wix.pdb1 --- Chain | Description 1.1/A | No description available 1.2/A | No description available 1.1/B 1.2/B | No description available > info chains chain id #1.1/A chain_id A chain id #1.1/B chain_id B chain id #1.2/A chain_id A chain id #1.2/B chain_id B > set bgColor white > preset cartoons/nucleotides cylinders/stubs Using preset: Cartoons/Nucleotides / Cylinders/Stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel mistyrose > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel thistle > color sel mediumturquoise > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel slateblue > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel aquamarine > color sel lightskyblue > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > color sel lightsteelblue > color sel thistle > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel plum > color sel lightcoral > color sel steelblue > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel plum > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel slateblue > color sel steelblue > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel seagreen > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > color sel mediumturquoise > color sel aquamarine > color sel palegreen > color #1.2 #7da977ff > color #1.2 #89b983ff > color #1.2 #6d9468ff > color #1.2 #9fd798ff > color #1.2 #8bd76cff > color #1.2 #9cd773ff > color #1.2 #9ad773ff > color #1.2 #8dd76cff > color #1.2 #89d772ff > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel cornflowerblue > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel tomato > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel seagreen > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > color sel goldenrod > select ligand 176 atoms, 188 bonds, 8 residues, 2 models selected > color byelement sel Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color sel byelement > preset cartoons/nucleotides licorice/ovals Using preset: Cartoons/Nucleotides / Licorice/Ovals Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh default arrows f x round width 1 thick 1 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides tube/slab shape ellipsoid > preset cartoons/nucleotides ribbons/slabs Using preset: Cartoons/Nucleotides / Ribbons/Slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > select #1.1/A 1209 atoms, 1187 bonds, 5 pseudobonds, 198 residues, 2 models selected > color sel Medium Orchid Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color sel #BA55D3 > preset cartoons/nucleotides cylinders/stubs Using preset: Cartoons/Nucleotides / Cylinders/Stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > color sel #DA70D6 > color sel #FDE6F5 > color sel #DA70D6 > color sel #D494D4 > select #1.1/B 1281 atoms, 1253 bonds, 5 pseudobonds, 210 residues, 2 models selected > color sel #3CB371 > color sel #9AD29A > color sel #7EB77E > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel #C6A77C > select #1.2/B 1281 atoms, 1253 bonds, 4 pseudobonds, 210 residues, 2 models selected > color sel lightsteelblue > color sel lightskyblue > color sel lsteelblue Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color sel steelblue > color #1.2 #628fb6ff > color #1.2 #618eb6ff > color #1.2 #6594beff > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel #C6A77C > lighting flat or adjust shininess 0. Expected a keyword > lighting flat or adjust shininess 0 Expected a keyword > select #8wix.pdb1 group Expected an objects specifier or a keyword > select 8wix.pdb1 group Expected an objects specifier or a keyword > select all 4980 atoms, 4880 bonds, 18 pseudobonds, 816 residues, 5 models selected > lighting soft or use ambient occlusion true Expected a keyword > set silhouettes true > set silhouetteWidth 2 > lighting flat > lighting soft > shininess 0 Unknown command: shininess 0 > set ambientOcclusion false Expected a keyword > set depthCue false Expected a keyword > select all 4980 atoms, 4880 bonds, 18 pseudobonds, 816 residues, 5 models selected > set depthCue false Expected a keyword > set ambientOcclusion false Expected a keyword > set shadows false Expected a keyword > show sel surfaces > hide sel surfaces > show sel cartoons > hide sel cartoons > show sel cartoons > show sel atoms [Repeated 1 time(s)] > hide sel atoms > lighting simple > lighting soft > lighting full > lighting soft > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > lighting soft > lighting full > ui tool show ""Side View"" > set bgColor gray > set bgColor white > set bgColor black > set bgColor white > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting soft > lighting flat > lighting full > select #1.2/A 1209 atoms, 1187 bonds, 4 pseudobonds, 198 residues, 2 models selected > color sel #C6A77C > show sel atoms [Repeated 2 time(s)] > hide sel atoms > show ligand > select ligand 176 atoms, 188 bonds, 8 residues, 2 models selected > color sel byelement > label /A text α1 > label #1.1/A text α1 > hide label Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > label hide /A Expected one of 'atoms', 'bonds', 'models', 'pseudobonds', or 'residues' or a keyword > undo > redo > ui mousemode right label [Repeated 2 time(s)] > label delete > label #1.1/A text α1 > label delete > label #1.1/B:3 > label #1.2/A:88 > label #1.2/A:96 > label delete > ui mousemode right label > label #1.2/A:37 > label delete > ui mousemode right translate > ui mousemode right select Drag select of 8 residues Drag select of 11 residues Drag select of 13 residues Drag select of 9 residues Drag select of 17 residues > save ""/Users/suxining/Desktop/Fig 1 A.cxs"" ——— End of log from Tue May 6 14:21:09 2025 ——— opened ChimeraX session OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M3 OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac15,12 Model Number: MXCR3CH/A Chip: Apple M3 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 11881.101.1 OS Loader Version: 11881.101.1 Software: System Software Overview: System Version: macOS 15.4.1 (24E263) Kernel Version: Darwin 24.4.0 Time since boot: 8 days, 10 minutes Graphics/Displays: Apple M3: Chipset Model: Apple M3 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL P2423DE: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX