id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17402 Crash on Mac waking from sleep nirakar.basnet@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.4-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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""rollouts"" : [ { ""rolloutId"" : ""64628732bf2f5257dedc8988"", ""factorPackIds"" : { }, ""deploymentId"" : 240000001 }, { ""rolloutId"" : ""652eff3d1bce5442b8d753c9"", ""factorPackIds"" : { }, ""deploymentId"" : 240000009 } ], ""experiments"" : [ { ""treatmentId"" : ""28060e10-d4e5-4163-aa2b-d8bd088d5cbf"", ""experimentId"" : ""6685b283afc7c17197d69eec"", ""deploymentId"" : 400000007 }, { ""treatmentId"" : ""d7ff00dd-1c5a-4dbb-85d6-7a936d671384"", ""experimentId"" : ""67f46bbc84eaf455d73c6098"", ""deploymentId"" : 400000001 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/nirakar.basnet/Documents/Projects/Baker_lab/UNC5D_2/unc_prep.cxs opened ChimeraX session > select add #1.2 2060 atoms, 262 residues, 1 model selected > select add #1.3 4647 atoms, 588 residues, 2 models selected > select subtract #1.3 2060 atoms, 262 residues, 3 models selected > select add #1.4 4101 atoms, 521 residues, 2 models selected > coulombic sel Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for 5ftt_A SES surface #1.2: minimum, -29.28, mean -1.94, maximum 15.08 Coulombic values for 5ftt_E SES surface #1.4: minimum, -20.65, mean -1.89, maximum 15.52 To also show corresponding color key, enter the above coulombic command and add key true > select clear > select add #1.3 2587 atoms, 326 residues, 1 model selected > select subtract #1.3 1 model selected > select add #1.5 2641 atoms, 332 residues, 1 model selected > color #1.5 #d8ffe400 > view sel > select add #1 9449 atoms, 9669 bonds, 1195 residues, 3 models selected > select subtract #1 4 models selected > select add #1.2 2060 atoms, 262 residues, 1 model selected > select subtract #1.2 1 model selected > select add #1.5 2641 atoms, 332 residues, 1 model selected > select clear > select add #1 9449 atoms, 9669 bonds, 1195 residues, 3 models selected > select subtract #1 4 models selected > ui tool show ""Side View"" > lighting flat > lighting full > lighting shadows false > lighting shadows true > lighting shadows false > lighting flat > lighting full > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting simple > graphics silhouettes false > graphics silhouettes true > graphics silhouettes false > lighting flat > lighting full > lighting shadows false > graphics silhouettes false > coloring palette Unknown command: coloring palette > view > coulombic Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for 5ftt_A SES surface #1.2: minimum, -29.28, mean -1.94, maximum 15.08 Coulombic values for 5ftt_B SES surface #1.3: minimum, -14.25, mean -1.65, maximum 12.12 Coulombic values for 5ftt_E SES surface #1.4: minimum, -20.65, mean -1.89, maximum 15.52 Coulombic values for 5ftt_F SES surface #1.5: minimum, -14.46, mean -1.37, maximum 14.73 To also show corresponding color key, enter the above coulombic command and add key true > hide surfaces > select /B 2601 atoms, 2657 bonds, 327 residues, 1 model selected > save > /Users/nirakar.basnet/Documents/Projects/Baker_lab/UNC5D_2/unc_prep_2.cxs > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /F 2655 atoms, 2713 bonds, 333 residues, 1 model selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > view > select /A/E 4157 atoms, 4271 bonds, 525 residues, 1 model selected > save > /Users/nirakar.basnet/Documents/Projects/Baker_lab/UNC5D_2/UNC5D_dimer.pdb > selectedOnly true relModel #1 > select /A 2088 atoms, 2145 bonds, 264 residues, 1 model selected > select /E 2069 atoms, 2126 bonds, 261 residues, 1 model selected > select /A 2088 atoms, 2145 bonds, 264 residues, 1 model selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /E 2069 atoms, 2126 bonds, 261 residues, 1 model selected > save > /Users/nirakar.basnet/Documents/Projects/Baker_lab/UNC5D_2/UNC5D_monomer.pdb > selectedOnly true relModel #1 > select clear > close session > open 7ZA2 Summary of feedback from opening 7ZA2 fetched from pdb --- note | Fetching compressed mmCIF 7za2 from http://files.rcsb.org/download/7za2.cif 7za2 title: GPC3-Unc5D octamer structure and role in cell migration [more info...] Chain information for 7za2 #1 --- Chain | Description | UniProt A B C D | Glypican-3 | GPC3_MOUSE 31-482 E F G H | Netrin receptor UNC5D | UNC5D_RAT 46-307 Non-standard residues in 7za2 #1 --- MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose) NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) > show cartoons > hide atoms > select /A:61-476 5631 atoms, 5685 bonds, 4 pseudobonds, 351 residues, 2 models selected > select /B:61-476 5630 atoms, 5684 bonds, 4 pseudobonds, 351 residues, 2 models selected > select /C:61-476 5631 atoms, 5685 bonds, 4 pseudobonds, 351 residues, 2 models selected > select /D:61-476 5631 atoms, 5685 bonds, 4 pseudobonds, 351 residues, 2 models selected > select /C:61-476 5631 atoms, 5685 bonds, 4 pseudobonds, 351 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /D:61-476 5631 atoms, 5685 bonds, 4 pseudobonds, 351 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /A:61-476 5631 atoms, 5685 bonds, 4 pseudobonds, 351 residues, 2 models selected > select /E:51-301 3904 atoms, 3956 bonds, 251 residues, 1 model selected > select /F:51-301 3904 atoms, 3956 bonds, 251 residues, 1 model selected > select /G:51-301 3904 atoms, 3956 bonds, 251 residues, 1 model selected > select /H:51-301 3905 atoms, 3957 bonds, 251 residues, 1 model selected > close session > open 7ZA2 7za2 title: GPC3-Unc5D octamer structure and role in cell migration [more info...] Chain information for 7za2 #1 --- Chain | Description | UniProt A B C D | Glypican-3 | GPC3_MOUSE 31-482 E F G H | Netrin receptor UNC5D | UNC5D_RAT 46-307 Non-standard residues in 7za2 #1 --- MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose) NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) > hide atoms > show cartoons > select /E:51-301 3904 atoms, 3956 bonds, 251 residues, 1 model selected > select /F:51-301 3904 atoms, 3956 bonds, 251 residues, 1 model selected > select /H:51-301 3905 atoms, 3957 bonds, 251 residues, 1 model selected > select /G:51-301 3904 atoms, 3956 bonds, 251 residues, 1 model selected > select clear > interfaces ~solvent 12 buried areas: C E 797, D F 763, B H 761, A G 755, F H 455, E G 450, F G 435, C G 428, E H 423, A E 383, B F 326, D H 303 > select /F:51-301 3904 atoms, 3956 bonds, 251 residues, 1 model selected Cell requested for row 0 is out of bounds for table with 0 rows! Resizing table model. > select /F:51-301 3904 atoms, 3956 bonds, 251 residues, 1 model selected Cell requested for row 0 is out of bounds for table with 0 rows! Resizing table model. > delete atoms sel > delete bonds sel > interfaces ~solvent 8 buried areas: C E 797, B H 761, A G 755, E G 450, C G 428, E H 423, A E 383, D H 303 > delete atoms sel > delete bonds sel > interfaces ~solvent 5 buried areas: C E 797, A G 755, E G 450, C G 428, A E 383 > delete atoms sel > delete bonds sel > select /D 5687 atoms, 5743 bonds, 4 pseudobonds, 353 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > interfaces ~solvent 5 buried areas: C E 797, A G 755, E G 450, C G 428, A E 383 > show sel surfaces > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > show surfaces > interfaces ~solvent 5 buried areas: C E 797, A G 755, E G 450, C G 428, A E 383 > delete atoms sel > delete bonds sel > interfaces ~solvent 5 buried areas: C E 797, A G 755, E G 450, C G 428, A E 383 > hide surfaces > interfaces select & ~solvent Missing or invalid ""atoms"" argument: invalid atoms specifier > select clear > interfaces ~solvent 5 buried areas: C E 797, A G 755, E G 450, C G 428, A E 383 > close session > open 7ZA2 format mmcif fromDatabase pdb 7za2 title: GPC3-Unc5D octamer structure and role in cell migration [more info...] Chain information for 7za2 #1 --- Chain | Description | UniProt A B C D | Glypican-3 | GPC3_MOUSE 31-482 E F G H | Netrin receptor UNC5D | UNC5D_RAT 46-307 Non-standard residues in 7za2 #1 --- MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose) NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) > show atoms > hide atoms > show cartoons > interfaces ~solvent 12 buried areas: C E 797, D F 763, B H 761, A G 755, F H 455, E G 450, F G 435, C G 428, E H 423, A E 383, B F 326, D H 303 > select /D 5687 atoms, 5743 bonds, 4 pseudobonds, 353 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /B 5686 atoms, 5742 bonds, 4 pseudobonds, 353 residues, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /F 3982 atoms, 4037 bonds, 254 residues, 1 model selected > delete atoms sel > delete bonds sel > select /H 3933 atoms, 3986 bonds, 252 residues, 1 model selected > delete atoms sel > delete bonds sel > interfaces ~solvent 5 buried areas: C E 797, A G 755, E G 450, C G 428, A E 383 > delete atoms sel > delete bonds sel > interfaces ~solvent 5 buried areas: C E 797, A G 755, E G 450, C G 428, A E 383 > color sel red > color sel hot pink > save > /Users/nirakar.basnet/Documents/Projects/Baker_lab/UNC5D_2/UNC5D_GPC3/UNC5d_GPC3.cxs > save /Users/nirakar.basnet/Desktop/image3.png supersample 3 > save /Users/nirakar.basnet/Desktop/image4.png supersample 3 > color sel red > color sel hot pink > save > /Users/nirakar.basnet/Documents/Projects/Baker_lab/UNC5D_2/UNC5D_GPC3/UNC5d_GPC3_2.cxs ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M3 Pro OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac15,7 Model Number: Z1AK0014ELL/A Chip: Apple M3 Pro Total Number of Cores: 12 (6 performance and 6 efficiency) Memory: 36 GB System Firmware Version: 11881.101.1 OS Loader Version: 11881.101.1 Software: System Software Overview: System Version: macOS 15.4 (24E248) Kernel Version: Darwin 24.4.0 Time since boot: 2 days, 10 hours, 8 minutes Graphics/Displays: Apple M3 Pro: Chipset Model: Apple M3 Pro Type: GPU Bus: Built-In Total Number of Cores: 18 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL P2417H: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported 27B2: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 75.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX