id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
17100	Crash handling text input	chimerax-bug-report@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        macOS-15.2-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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  ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=3.5G written=2147K(0%) resident=2147K(0%) swapped_out=0K(0%) unallocated=3.5G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               256K        2 \nActivity Tracing                   256K        1 \nCG image                           720K       29 \nColorSync                          688K       33 \nCoreAnimation                     2256K      115 \nCoreGraphics                        80K        5 \nCoreUI image data                 5472K       40 \nFoundation                          32K        2 \nKernel Alloc Once                   32K        1 \nMALLOC                             2.7G      122 \nMALLOC guard page                  288K       18 \nMach message                        64K        3 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                       56.8M       48 \nStack                            275.1M       48 \nVM_ALLOCATE                      313.9M      207 \nVM_ALLOCATE (reserved)           160.0M        4         reserved VM address space (unallocated)\n__AUTH                            5285K      672 \n__AUTH_CONST                      70.8M      920 \n__CTF                               824        1 \n__DATA                            34.2M     1093 \n__DATA_CONST                      34.7M     1110 \n__DATA_DIRTY                      2763K      342 \n__FONT_DATA                        2352        1 \n__GLSLBUILTINS                    5174K        1 \n__INFO_FILTER                         8        1 \n__LINKEDIT                       643.4M      184 \n__OBJC_RW                         2373K        1 \n__TEXT                             1.3G     1130 \n__TPRO_CONST                       272K        2 \ndyld private memory                 48K        2 \nmapped file                      566.5M       77 \nowned unmapped memory             74.6M        1 \npage table in kernel              2147K        1 \nshared memory                     3696K       25 \n===========                     =======  ======= \nTOTAL                              6.2G     6246 \nTOTAL, minus reserved VM space     6.0G     6246 \n"",
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}
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 39117 fromDatabase emdb

Opened emdb 39117 as #1, grid size 300,300,300, pixel 0.705, shown at level
0.165, step 2, values float32, fit PDB 8ybe  

> select ~sel & ##selected

Nothing selected  

> select ~sel & ##selected

Nothing selected  

> select ~sel & ##selected

Nothing selected  

> open 22758 fromDatabase emdb

Opened emdb 22758 as #2, grid size 300,300,300, pixel 0.91, shown at level
0.0201, step 2, values float32, fit PDB 7ka4  

> close #1

> ui tool show AlphaFold

No sequence chosen for AlphaFold search  

> alphafold match P00883

1 AlphaFold model found using UniProt identifier: P00883 (UniProt P00883)  
Sequence Similarity  
---  
AlphaFold Model| Query Sequence| Identity %| Coverage %  
P00883 | P00883 | 100.0 | 100.0    
Opened 1 AlphaFold model  
> select add #12766 atoms, 2820 bonds, 364 residues, 1 model selected  
> ui mousemode right ""translate selected models""> view matrix models
> #1,1,0,0,-33.802,0,1,0,51.791,0,0,1,46.925> view matrix models
> #1,1,0,0,-43.194,0,1,0,64.184,0,0,1,64.652> view matrix models
> #1,1,0,0,43.428,0,1,0,4.9586,0,0,1,76.067> view matrix models
> #1,1,0,0,109.95,0,1,0,96.968,0,0,1,156.31> view matrix models
> #1,1,0,0,114.44,0,1,0,114.53,0,0,1,121.36> view matrix models
> #1,1,0,0,110.29,0,1,0,114.9,0,0,1,121.72> view matrix models
> #1,1,0,0,118.35,0,1,0,119.23,0,0,1,115.44> view matrix models
> #1,1,0,0,118.29,0,1,0,119.23,0,0,1,115.45> view matrix models
> #1,1,0,0,116.02,0,1,0,121.15,0,0,1,114.74> ui tool show ""Local EM
> Fitting""Populating font family aliases took 112 ms. Replace uses of missing
> font family ""Times"" with one that exists to avoid this cost.  
Must specify exactly two half maps for fitting  
> ui tool show ""Local EM Fitting""Center of view does not intersect emdb 22758
> #2 bounding box  
> view matrix models #1,1,0,0,114.98,0,1,0,119.03,0,0,1,116.79> ui mousemode
> right translate> ui tool show ""Local EM Fitting""> marker #3 position
> 129.491,143.812,123.148 radius 38.4176 color 100,65,0,50> phenix
> emplaceLocal #1 mapData #2 resolution 6 center 129.491,143.812,123.148
> showSharpenedMap false applySymmetry false> fitmap #1 inMap #2 resolution 6
> search 200 radius 10 Opened AlphaFold P00883 map 6 as #3, grid size
> 45,41,55, pixel 2, shown at level 0.1, step 1, values float32  
Found 176 unique fits from 200 random placements having fraction of points
inside contour >= 0.100 (200 of 200).  
  
Correlations and times found:  
0.667 (4), 0.3959 (1), 0.3957 (1), 0.3907 (2), 0.3875 (1), 0.3871 (2), 0.3862
(3), 0.3859 (1), 0.3841 (1), 0.384 (1), 0.3821 (1), 0.3821 (2), 0.3807 (1),
0.3807 (2), 0.3804 (1), 0.3792 (1), 0.3789 (2), 0.3784 (1), 0.3782 (1), 0.378
(1), 0.378 (1), 0.378 (1), 0.3775 (1), 0.3772 (1), 0.3769 (1), 0.3762 (2),
0.3753 (1), 0.3752 (2), 0.3752 (1), 0.3751 (1), 0.3749 (1), 0.3742 (1), 0.3741
(1), 0.374 (1), 0.374 (1), 0.3738 (1), 0.3736 (2), 0.3736 (1), 0.3735 (1),
0.3733 (2), 0.3731 (1), 0.373 (1), 0.3729 (1), 0.3728 (1), 0.372 (1), 0.371
(1), 0.3707 (1), 0.3707 (1), 0.3702 (1), 0.3702 (1), 0.37 (1), 0.3698 (1),
0.3697 (1), 0.3697 (1), 0.3695 (1), 0.3692 (1), 0.3691 (1), 0.3688 (1), 0.3687
(1), 0.3687 (1), 0.3684 (1), 0.3683 (1), 0.3682 (1), 0.3682 (1), 0.3681 (1),
0.368 (2), 0.3678 (1), 0.3677 (1), 0.3676 (1), 0.3675 (3), 0.3674 (1), 0.3672
(1), 0.367 (1), 0.367 (1), 0.3668 (1), 0.3667 (1), 0.3667 (2), 0.3664 (1),
0.3661 (1), 0.3659 (1), 0.3654 (1), 0.3651 (1), 0.3649 (1), 0.3649 (1), 0.3647
(1), 0.3643 (2), 0.3642 (1), 0.3639 (1), 0.3636 (1), 0.3635 (1), 0.3634 (1),
0.363 (1), 0.3628 (1), 0.3624 (1), 0.3624 (1), 0.3618 (1), 0.3616 (1), 0.3614
(1), 0.361 (1), 0.3609 (1), 0.3607 (1), 0.3602 (1), 0.36 (2), 0.3599 (1),
0.3598 (1), 0.3597 (1), 0.3596 (1), 0.3585 (1), 0.3584 (1), 0.3582 (1), 0.358
(1), 0.3577 (1), 0.3576 (1), 0.3576 (1), 0.3576 (1), 0.3573 (1), 0.3571 (1),
0.3568 (1), 0.3567 (1), 0.3564 (1), 0.3563 (1), 0.3562 (1), 0.3561 (1), 0.3559
(1), 0.3556 (1), 0.3556 (1), 0.3553 (2), 0.3551 (1), 0.3549 (1), 0.3548 (1),
0.3544 (1), 0.3542 (1), 0.3537 (1), 0.3534 (1), 0.3529 (1), 0.3528 (1), 0.3525
(1), 0.3523 (1), 0.3519 (1), 0.3517 (1), 0.3514 (1), 0.3514 (1), 0.3512 (1),
0.3506 (1), 0.3487 (1), 0.3487 (1), 0.3485 (1), 0.3469 (1), 0.3468 (1), 0.3466
(1), 0.3466 (1), 0.3463 (1), 0.346 (1), 0.3448 (1), 0.3441 (1), 0.3435 (1),
0.3406 (1), 0.3402 (1), 0.3395 (3), 0.3386 (1), 0.3381 (1), 0.338 (1), 0.3371
(1), 0.337 (1), 0.3366 (1), 0.3349 (1), 0.3343 (1), 0.3338 (2), 0.3335 (1),
0.333 (1), 0.3305 (1), 0.33 (1), 0.3297 (1), 0.3265 (1), 0.3257 (1), 0.3243
(1)  
  
Best fit found:  
Fit map AlphaFold P00883 map 6 in map emdb 22758 using 6600 points  
correlation = 0.667, correlation about mean = 0.6813, overlap = 26.91  
steps = 196, shift = 6.04, angle = 47 degrees  
Position of AlphaFold P00883 map 6 (#3) relative to emdb 22758 (#2)
coordinates:  
Matrix rotation and translation  
0.24010308 -0.84515794 -0.47755475 119.23013185  
-0.71515741 0.17865744 -0.67574503 128.25308617  
0.65643002 0.50377531 -0.56152477 115.67524126  
Axis 0.71862016 -0.69087772 0.07920254  
Axis point 0.00000000 79.58519116 99.43768399  
Rotation angle (degrees) 124.84666179  
Shift along axis 6.23574979  
  
Found 176 fits.  


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M4
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: iMac
      Model Identifier: Mac16,3
      Model Number: Z1K10006LLL/A
      Chip: Apple M4
      Total Number of Cores: 10 (4 performance and 6 efficiency)
      Memory: 24 GB
      System Firmware Version: 11881.61.3
      OS Loader Version: 11881.61.3

Software:

    System Software Overview:

      System Version: macOS 15.2 (24C101)
      Kernel Version: Darwin 24.2.0
      Time since boot: 7 days, 21 hours, 21 minutes

Graphics/Displays:

    Apple M4:

      Chipset Model: Apple M4
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 10
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        iMac:
          Resolution: 4480 x 2520
          UI Looks like: 2240 x 1260 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    autocommand: 2.2.2
    babel: 2.16.0
    backports.tarfile: 1.2.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-Clipper: 0.24.0
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ISOLDE: 1.9
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PhenixUI: 1.3.7
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    importlib_metadata: 8.0.0
    importlib_resources: 6.4.0
    inflect: 7.3.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jaraco.context: 5.3.0
    jaraco.functools: 4.0.1
    jaraco.text: 3.12.1
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    more-itertools: 10.3.0
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    ordered-set: 4.1.0
    packaging: 23.2
    packaging: 24.1
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    platformdirs: 4.2.2
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4.2
    traitlets: 5.14.3
    typeguard: 4.3.0
    typing_extensions: 4.12.2
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
    zipp: 3.19.2
}}}
"	defect	closed	normal		Window Toolkit		can't reproduce		Tom Goddard				all	ChimeraX