id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17038 Mac multi-display crash chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.3.1-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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""factorPackIds"" : { }, ""deploymentId"" : 240000032 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/nimigeanlab/Library/CloudStorage/OneDrive- > UniversityofTexasatSanAntonio/publications/SthK_lipids_activation/structures/PE_cAMP_job212_emready.mrc Opened PE_cAMP_job212_emready.mrc as #1, grid size 541,541,541, pixel 0.5, shown at level 0.365, step 4, values float32 > open > /Users/nimigeanlab/Desktop/POPE_cAMP/validation/POPE_cAMP_250306-coot-6.pdb Summary of feedback from opening /Users/nimigeanlab/Desktop/POPE_cAMP/validation/POPE_cAMP_250306-coot-6.pdb --- warnings | Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 9652 messages similar to the above omitted Chain information for POPE_cAMP_250306-coot-6.pdb #2 --- Chain | Description A B C D | No description available > volume #1 step 1 > volume #1 level 0.8924 > volume #1 level 3.227 > lighting soft > volume #1 color silver > graphics silhouettes true > volume #1 level 3.565 > volume #1 level 3.716 > hide #2.1 models > ui tool show ""Side View"" > surface dust #1 size 5 > volume #1 level 3.565 > open > /Users/nimigeanlab/Desktop/POPE/job204_ref_float32_2/apoPOPE_job204_emready.mrc Opened apoPOPE_job204_emready.mrc as #3, grid size 527,527,527, pixel 0.5, shown at level 0.541, step 4, values float32 > select add #3 3 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.99538,-0.095966,-0.00014126,13.291,0.095966,0.99538,0.0025771,-12.424,-0.00010671,-0.0025788,1,0.35481 > view matrix models > #3,0.86737,-0.49762,0.0062222,82.277,0.49742,0.86728,0.019987,-50.988,-0.015342,-0.014241,0.99978,3.9352 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.86737,-0.49762,0.0062222,82.032,0.49742,0.86728,0.019987,-49.699,-0.015342,-0.014241,0.99978,1.6831 > ui mousemode right ""translate selected models"" > ui mousemode right select > select clear > volume #3 step 1 > volume #3 level 2.15 > ui tool show ""Fit in Map"" > fitmap #3 inMap #1 Fit map apoPOPE_job204_emready.mrc in map PE_cAMP_job212_emready.mrc using 824956 points correlation = 0.9609, correlation about mean = 0.8523, overlap = 3.906e+07 steps = 80, shift = 4.35, angle = 6.37 degrees Position of apoPOPE_job204_emready.mrc (#3) relative to PE_cAMP_job212_emready.mrc (#1) coordinates: Matrix rotation and translation 0.91646851 -0.40010681 0.00005080 67.23369142 0.40010680 0.91646851 0.00013582 -38.48460805 -0.00010090 -0.00010415 0.99999999 -3.34670056 Axis -0.00029989 0.00018956 0.99999994 Axis point 125.78337562 141.77665972 0.00000000 Rotation angle (degrees) 23.58485722 Shift along axis -3.37415830 > volume #3 level 2.313 > volume #3 level 2.87 > open > /Users/nimigeanlab/Desktop/POPE/validation/apoSthK_POPE_250225-coot-9.pdb Summary of feedback from opening /Users/nimigeanlab/Desktop/POPE/validation/apoSthK_POPE_250225-coot-9.pdb --- warnings | Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 9775 messages similar to the above omitted Chain information for apoSthK_POPE_250225-coot-9.pdb #4 --- Chain | Description A B C D | No description available > fitmap #4 inMap #3 Fit molecule apoSthK_POPE_250225-coot-9.pdb (#4) to map apoPOPE_job204_emready.mrc (#3) using 13040 atoms average map value = 9.679, steps = 240 shifted from previous position = 5.82 rotated from previous position = 23.6 degrees atoms outside contour = 1734, contour level = 2.8696 Position of apoSthK_POPE_250225-coot-9.pdb (#4) relative to apoPOPE_job204_emready.mrc (#3) coordinates: Matrix rotation and translation 0.99999986 -0.00047851 -0.00023318 0.10498620 0.00047850 0.99999989 -0.00003168 -0.06982471 0.00023319 0.00003157 0.99999997 -0.03353848 Axis 0.05931227 -0.43730501 0.89735522 Axis point 139.88511126 218.53634675 0.00000000 Rotation angle (degrees) 0.03055221 Shift along axis 0.00666574 > volume #3 color #00fdff > volume #3 color #73fcd6 > volume #3 color #00fdff > volume #3 color #76d6ff > volume #3 color #0096ff > volume #3 color #76d6ff > volume #1 color #76d6ff > volume #3 color darkgrey > volume #3 color silver > hide #!2 models > color #4 #ff9300ff > open /Users/nimigeanlab/Desktop/POPE/job204_ref_float32_2/run_class001.mrc Opened run_class001.mrc as #5, grid size 330,330,330, pixel 0.801, shown at level 0.00325, step 2, values float32 > volume #5 step 1 > volume #5 level 0.004159 > fitmap #4 inMap #3 Fit molecule apoSthK_POPE_250225-coot-9.pdb (#4) to map apoPOPE_job204_emready.mrc (#3) using 13040 atoms average map value = 9.678, steps = 28 shifted from previous position = 0.00351 rotated from previous position = 0.0111 degrees atoms outside contour = 1734, contour level = 2.8696 Position of apoSthK_POPE_250225-coot-9.pdb (#4) relative to apoPOPE_job204_emready.mrc (#3) coordinates: Matrix rotation and translation 0.99999988 -0.00047755 -0.00007956 0.08172748 0.00047756 0.99999988 0.00008717 -0.08336141 0.00007952 -0.00008721 0.99999999 0.00189349 Axis -0.17724557 -0.16169203 0.97079333 Axis point 174.31947396 171.40541002 0.00000000 Rotation angle (degrees) 0.02818490 Shift along axis 0.00083123 > fitmap #4 inMap #3 Fit molecule apoSthK_POPE_250225-coot-9.pdb (#4) to map apoPOPE_job204_emready.mrc (#3) using 13040 atoms average map value = 9.679, steps = 36 shifted from previous position = 0.000697 rotated from previous position = 0.0102 degrees atoms outside contour = 1735, contour level = 2.8696 Position of apoSthK_POPE_250225-coot-9.pdb (#4) relative to apoPOPE_job204_emready.mrc (#3) coordinates: Matrix rotation and translation 0.99999986 -0.00047717 -0.00023314 0.10330560 0.00047717 0.99999989 -0.00000164 -0.07005844 0.00023314 0.00000153 0.99999997 -0.03027245 Axis 0.00299035 -0.43899121 0.89848638 Axis point 143.31601923 216.42823746 0.00000000 Rotation angle (degrees) 0.03042898 Shift along axis 0.00386457 > fitmap #5 inMap #3 Fit map run_class001.mrc in map apoPOPE_job204_emready.mrc using 188234 points correlation = 0.929, correlation about mean = 0.72, overlap = 1.074e+04 steps = 240, shift = 5.82, angle = 23.6 degrees Position of run_class001.mrc (#5) relative to apoPOPE_job204_emready.mrc (#3) coordinates: Matrix rotation and translation 1.00000000 -0.00003579 -0.00008190 0.03394036 0.00003579 1.00000000 0.00001782 -0.01666233 0.00008190 -0.00001783 1.00000000 0.00262773 Axis -0.19557198 -0.89864517 0.39266839 Axis point 12.84684419 0.00000000 436.77878459 Rotation angle (degrees) 0.00522178 Shift along axis 0.00936757 > volume #5 level 0.00544 > volume #5 level 0.004234 > select #4:500-600 556 atoms, 536 bonds, 20 residues, 1 model selected > volume #5 level 0.004234 > volume #5 level 0.004161 > ui tool show ""Color Zone"" > color zone #5 near sel distance 4.8 > color zone #5 near sel distance 4.84 > color zone #5 near sel distance 3.43 > color zone #5 near sel distance 3.31 > color zone #5 near sel distance 2.86 > color zone #5 near sel distance 2.02 > color zone #5 near sel distance 1.92 > color zone #5 near sel distance 1.82 > color zone #5 near sel distance 1.92 > color zone #5 near sel distance 2.02 > color zone #5 near sel distance 2 > volume splitbyzone #5 Opened run_class001.mrc 0 as #6.1, grid size 330,330,330, pixel 0.801, shown at level 0.00416, step 1, values float32 Opened run_class001.mrc 1 as #6.2, grid size 330,330,330, pixel 0.801, shown at level 0.00416, step 1, values float32 > hide #!6.2 models > close #6.1 > show #!6.2 models > hide #!6.2 models > hide #6.2.1 models > show #6.2.1 models > hide #!6 models > show #!6 models > hide #!6 models > show #!5 models > hide #!5 models > close #5 Cell requested for row 4 is out of bounds for table with 7 rows! Resizing table model. > show #!6 models > hide #!4 models > show #!3 models > volume #6.2 level 0.004337 > surface dust #3 size 5 > surface dust #6.2 size 8.01 > volume #6.2 level 0.004372 > close #6.2 > hide #6 models > show #6 models > hide #6 models > show #6 models > hide #6 models > show #6 models > close #6 > show #!1 models > hide #!3 models > show #!2 models > select #2:501 108 atoms, 104 bonds, 4 residues, 1 model selected > select #2:500 88 atoms, 100 bonds, 4 residues, 1 model selected > hide #!2 models > open > /Users/nimigeanlab/Desktop/POPE/job204_ref_float32_2/job206/postprocess.mrc Opened postprocess.mrc as #5, grid size 330,330,330, pixel 0.801, shown at level 0.00581, step 2, values float32 > hide #!1 models > volume #5 step 1 > volume #5 level 0.009008 > surface dust #5 size 8.01 > volume #5 level 0.01167 > close #5 > show #!1 models > volume #1 color #0a84ff > volume #1 color #6ac4dc > volume #1 color #63e6e2 > volume #1 color #419cff > volume #1 color #3f638b > volume #1 color #0059d1 > volume #1 color #007aff > volume #1 color #76d6ff > volume #1 color #38d6ff > volume #1 color #9ad6ff > volume #1 color #95d6ff > volume #1 color #95dcff > volume #1 color #92dcff > volume #1 color #98dcff > volume #1 color #98ceff > volume #1 color #a8ceff > volume #1 color #acceff > volume #1 color #a7ceff > lighting soft > lighting full > lighting soft > select up 12876 atoms, 13156 bonds, 1576 residues, 1 model selected > select up 25916 atoms, 26460 bonds, 3164 residues, 6 models selected > select up 25916 atoms, 26460 bonds, 3164 residues, 6 models selected > select up 25916 atoms, 26460 bonds, 3164 residues, 6 models selected > select up 25916 atoms, 26460 bonds, 3164 residues, 6 models selected > select up 25916 atoms, 26460 bonds, 3164 residues, 6 models selected > select up 25916 atoms, 26460 bonds, 3164 residues, 6 models selected > select up 25916 atoms, 26460 bonds, 3164 residues, 6 models selected > select up 25916 atoms, 26460 bonds, 3164 residues, 6 models selected > select up 25916 atoms, 26460 bonds, 3164 residues, 6 models selected > select down 12876 atoms, 13156 bonds, 1576 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > select down 88 atoms, 100 bonds, 4 residues, 1 model selected > lighting msDepthBias 0.005 multiShadow 512 > ui tool show ""Side View"" > volume #1 level 2.888 > volume #1 level 3.076 > volume #3 level 3.714 > volume #1 level 3.49 > surface dust #1 size 5 > surface dust #3 size 5 > fitmap #1 inMap #3 Fit map PE_cAMP_job212_emready.mrc in map apoPOPE_job204_emready.mrc using 561960 points correlation = 0.9691, correlation about mean = 0.8175, overlap = 3.685e+07 steps = 40, shift = 0.0106, angle = 0.00834 degrees Position of PE_cAMP_job212_emready.mrc (#1) relative to apoPOPE_job204_emready.mrc (#3) coordinates: Matrix rotation and translation 0.91646029 0.40012565 0.00003560 -46.23062122 -0.40012565 0.91646029 -0.00005816 62.17179481 -0.00005590 0.00003906 1.00000000 3.37396916 Axis 0.00012148 0.00011433 -0.99999999 Axis point 125.77626610 141.79926727 0.00000000 Rotation angle (degrees) 23.58603423 Shift along axis -3.37247684 > lighting msDepthBias 0.005 multiShadow 512 > lighting msDepthBias 0.0005 multiShadow 512 > volume #3 color #d6d6d6 > volume #3 color #ebebeb > volume #3 color #d6d6d6 > volume #3 color #ebebeb > volume #3 color #d6d6d6 > lighting soft > lighting msDepthBias 0.0005 multiShadow 512 > lighting soft > lighting msDepthBias 0.0005 multiShadow 512 > lighting soft > lighting msDepthBias 0.005 multiShadow 512 > save ""/Users/nimigeanlab/OneDrive - University of Texas at San > Antonio/publications/SthK_lipids_activation/Figure4/POPE_maps.cxs"" > includeMaps true > save ""/Users/nimigeanlab/OneDrive - University of Texas at San > Antonio/publications/SthK_lipids_activation/Figure4/apoPOPE.tif"" width 938 > height 1131 supersample 4 transparentBackground true > save ""/Users/nimigeanlab/OneDrive - University of Texas at San > Antonio/publications/SthK_lipids_activation/Figure4/cAMPPOPE.tif"" width 938 > height 1131 supersample 4 transparentBackground true > show #!2 models > hide sel target a > select clear > hide #1#!2 target a > select #2:500 88 atoms, 100 bonds, 4 residues, 1 model selected > show sel target ab > style sel ball Changed 88 atom styles > color #1 #a7ceffdf models > color #1 #a7ceff87 models > color #1 #a7ceff55 models > color #1 #a7ceff40 models > color #1 #a7ceff03 models > color #1 #a7ceff00 models > color #1 #a7ceffff models > color #1 #a7cefff6 models > select clear > color #1 #a7cefff7 models Drag select of 1 PE_cAMP_job212_emready.mrc , 1 residues > select clear > volume #1 color #a7ceff71 > volume #1 color #a7ceff65 > volume #1 color #a7ceffc7 > volume #1 level 2.003 > volume #1 color #a7ceff > volume #1 level 2.114 > volume #1 level 2.412 > volume #1 level 2.449 ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.3 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,7 Model Number: Z16U0005FLL/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 11881.81.4 OS Loader Version: 11881.81.4 Software: System Software Overview: System Version: macOS 15.3.1 (24D70) Kernel Version: Darwin 24.3.0 Time since boot: 1 day, 16 hours, 16 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL S3422DWG: Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD) UI Looks like: 3440 x 1440 @ 100.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX