id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
16249	Similar Structures sequence plot: weirdness coloring with context menu	Elaine Meng	Tom Goddard	"If with the context menu in the sequence plot, I turn on coloring the plot by lddt it turns off (unchcks) coloring by conservation, which makes sense.  However, if I then turn on (check) coloring by lddt, they are both checked and the coloring is some indecipherable mishmash.  I was trying to figure out the ""similar sequences"" command options logic and I really don't understand it.  Does conservationColoring true (with default colors) mean the white-black-aqua-gold scheme, and then lddt coloring is supposed to completely replace the black-aqua-gold pixels with its own palette, right? Why aren't they mutually exclusive?  I understand white stays white because that means there is no aligned residue."	defect	assigned	high		Structure Analysis								all	ChimeraX