id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15127 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x0000000200d93240 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2024-05-07 14:15:11.00 +0200"",""app_version"":""1.6.1"",""slice_uuid"":""5df621ee-554e-36a8-b448-93b2334e5480"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 14.4.1 (23E224)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""C9D8FF51-E8AB-4D16-9E70-9BD27DDA0C6B""} { ""uptime"" : 43000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""Mac14,2"", ""coalitionID"" : 1528, ""osVersion"" : { ""train"" : ""macOS 14.4.1"", ""build"" : ""23E224"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-05-07 14:15:07.1562 +0200"", ""codeSigningMonitor"" : 1, ""incident"" : ""C9D8FF51-E8AB-4D16-9E70-9BD27DDA0C6B"", ""pid"" : 31797, ""translated"" : true, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2024-05-07 11:04:29.0345 +0200"", ""procStartAbsTime"" : 813926845535, ""procExitAbsTime"" : 1041366865566, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""222394C7-7FDD-5873-93DF-20B84A7FC35C"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""D34F8069-E1C1-FE0D-96BE-91B1F96E2FD2"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 4294967295, ""sleepWakeUUID"" : ""9095F1CD-35D1-485D-A8AC-362863E8A234"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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""sharedCache"" : { ""base"" : 140703245467648, ""size"" : 21474836480, ""uuid"" : ""b8d5ff9b-b3b6-327c-a409-07449b1e60da"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)\nWritable regions: Total=3.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.8G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG image 352K 62 \nColorSync 252K 30 \nCoreAnimation 664K 138 \nCoreGraphics 16K 3 \nCoreUI image data 5392K 63 \nFoundation 32K 2 \nKernel Alloc Once 8K 1 \nMALLOC 3.2G 133 \nMALLOC guard page 384K 24 \nMach message 16K 4 \nOpenGL GLSL 384K 4 \nRosetta Arena 4096K 2 \nRosetta Generic 1796K 446 \nRosetta IndirectBranch 2048K 1 \nRosetta JIT 128.0M 1 \nRosetta Return Stack 620K 62 \nRosetta Thread Context 620K 62 \nSTACK GUARD 8K 2 \nStack 165.4M 31 \nStack Guard 56.1M 29 \nVM_ALLOCATE 235.2M 364 \nVM_ALLOCATE (reserved) 128.1M 15 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 50.5M 775 \n__DATA_CONST 43.0M 403 \n__DATA_DIRTY 1797K 220 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 167.8M 152 \n__OBJC_RO 71.7M 1 \n__OBJC_RW 2193K 2 \n__TEXT 1.0G 777 \ndyld private memory 552K 6 \nmapped file 697.9M 510 \nshared memory 3012K 28 \n=========== ======= ======= \nTOTAL 5.9G 4361 \nTOTAL, minus reserved VM space 5.7G 4361 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""bf98101725b4b48a11d27f26da4460730527894c"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""60186475825c62000ccf5450"", ""factorPackIds"" : { }, ""deploymentId"" : 240000069 }, { ""rolloutId"" : ""648cada15dbc71671bb3aa1b"", ""factorPackIds"" : { ""SIRI_UNDERSTANDING_ATTENTION_ASSETS"" : ""65a8118e05d9422724106749"", ""SIRI_UNDERSTANDING_ASR_ASSISTANT"" : ""65a8115446dfa0720068876d"", ""SIRI_UNDERSTANDING_NL"" : ""65a811c046dfa0720068876e"", ""SIRI_EXPERIENCE_CAM"" : ""65a81173096f6a1f1ba46525"", ""SIRI_UNDERSTANDING_MORPHUN"" : ""65a811a96c2f903aa921c246"" }, ""deploymentId"" : 240000116 } ], ""experiments"" : [ { ""treatmentId"" : ""a34d22a1-a1a5-4126-a477-0c499e502c6a"", ""experimentId"" : ""65835bc103dc58766bab2d27"", ""deploymentId"" : 400000011 } ] }, ""reportNotes"" : [ ""PC register does not match crashing frame (0x0 vs 0x7FF897602A78)"" ] } ===== Log before crash start ===== Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/kgr849/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/hTRPM4/Chimera/20240507_hTRPM4_cSPARC_masks.cxs > format session Opened cryosparc_P48_J174_008_volume_map_box224.mrc as #1, grid size 224,224,224, pixel 1.5, shown at level 0.156, step 1, values float32 Opened hTRPM4_proteomer_0p5_box448.mrc as #2, grid size 448,448,448, pixel 0.749, shown at level 0.248, step 2, values float32 Opened hTRPM4_proteomer_0p5_box224.mrc as #3, grid size 224,224,224, pixel 1.5, shown at level 0.064, step 1, values float32 Opened hTPRM4_flexdomain_smooth.mrc as #4, grid size 448,448,448, pixel 0.749, shown at step 2, values float32 Opened hTPRM4_flexdomain_smooth_box224.mrc as #5, grid size 224,224,224, pixel 1.5, shown at level 0.021, step 1, values float32 Opened job0110_mask_pix1p498_box224_monomer-mask_C1.mrc as #8, grid size 224,224,224, pixel 1.5, shown at level 1, step 1, values float32 Opened cryosparc_P48_J179_mask.mrc as #9, grid size 224,224,224, pixel 1.5, shown at level 0.956, step 1, values float32 Opened cryosparc_P48_J182_mask.mrc as #10, grid size 224,224,224, pixel 1.5, shown at level 1, step 1, values float32 Opened job0104_mask_pix1p498_box224_cyto-mask_C1.mrc as #11, grid size 224,224,224, pixel 1.5, shown at level 1, step 1, values float32 Opened cryosparc_P48_J185_class_03_00132_volume.mrc as #12, grid size 120,120,120, pixel 2.8, shown at level 0.192, step 1, values float32 Opened emd_7133_additional_1.map as #13, grid size 320,320,320, pixel 1.05, shown at level 5.88, step 2, values float32 Opened hTRPM4_MSP_Science_box224_resampled.mrc as #14, grid size 224,224,224, pixel 1.5, shown at level 4.83, step 1, values float32 Opened cryosparc_P48_J190_002_volume_map.mrc as #15, grid size 224,224,224, pixel 1.5, shown at level 0.122, step 1, values float32 Opened cryosparc_P48_J192_002_volume_map.mrc as #16, grid size 224,224,224, pixel 1.5, shown at level 0.091, step 1, values float32 Opened emd_7133_additional_1.map resampled gaussian as #17, grid size 224,224,224, pixel 1.5, shown at level 2.25, step 1, values float32 Opened emd_7133_additional_1.map resampled gaussian as #18, grid size 224,224,224, pixel 1.5, shown at level 0.969, step 1, values float32 Opened hTRPM4_segments_full.mrc as #20, grid size 102,102,121, pixel 1.5,1.5,1.5, shown at level 1.3, step 1, values float32 Opened emd_7133_additional_1_89_regions.mrc as #22, grid size 115,115,130, pixel 1.5,1.5,1.5, shown at level 0.983, step 1, values float32 Opened cryosparc_P48_J197_002_volume_map.mrc as #6, grid size 224,224,224, pixel 1.5, shown at level 0.128, step 1, values float32 Opened job085_class005-006-007_24_regions_cyto-mask-base_resampled.mrc as #7, grid size 224,224,224, pixel 1.5, shown at level 0.000488, step 1, values float32 Opened emd_7133_additional_1_89_regions.mrc resampled as #21, grid size 224,224,224, pixel 1.5, shown at level 0.983, step 1, values float32 Opened hTRPM4_cyto_mask_C4_box224.mrc as #23, grid size 224,224,224, pixel 1.5, shown at level 0.000115, step 1, values float32 Opened cryosparc_P48_J201_mask.mrc as #24, grid size 224,224,224, pixel 1.5, shown at level 0.976, step 1, values float32 Opened hTRPM4_cyto_mask_C4_box224_resampled.mrc as #25, grid size 224,224,224, pixel 1.5, shown at level 0.000115, step 1, values float32 Opened cryosparc_P48_J201_mask-2.mrc as #26, grid size 224,224,224, pixel 1.5, shown at level 1, step 1, values float32 Opened cryosparc_P48_J205_002_volume_map.mrc as #27, grid size 224,224,224, pixel 1.5, shown at level 0.0759, step 1, values float32 Opened hTRPM4_cyto_mask_C4_box224.mrc resampled as #28, grid size 224,224,224, pixel 1.5, shown at level 0.000115, step 1, values float32 Opened hTRPM4_cyto_mask_C4_box224.mrc resampled as #29, grid size 224,224,224, pixel 1.5, shown at level 0.000115, step 1, values float32 Opened hTRPM4_cyto_mask_C4_box224.mrc resampled as #30, grid size 224,224,224, pixel 1.5, shown at level 0.000115, step 1, values float32 Opened hTRPM4_cyto_mask_C4_box224.mrc resampled as #31, grid size 224,224,224, pixel 1.5, shown at level 0.000115, step 1, values float32 Opened hTRPM4_cyto_mask_C4_box224.mrc resampled as #32, grid size 224,224,224, pixel 1.5, shown at level 0.000115, step 1, values float32 Opened hTRPM4_proteomer_nocyto_0p5_12_regions.mrc as #33, grid size 76,52,131, pixel 1.5,1.5,1.5, shown at level 2.63, step 1, values float32 opened ChimeraX session Showing hTRPM4_proteomer_0p5_box224.seg - 21 regions, 21 surfaces > hide #!27 models > hide #!33 models > show #!33 models > hide #!19 models > volume #33 level 0.08418 > vop resample #33 onGrid #1 Opened hTRPM4_proteomer_nocyto_0p5_12_regions.mrc resampled as #34, grid size 224,224,224, pixel 1.5, shown at step 1, values float32 > show #!1 models > save ""/Users/kgr849/OneDrive - University of > Copenhagen/hTRPM4/Chimera/hTRPM4_proteomer_nocyto_12_regions_box224.mrc"" > models #34 > volume #34 level 0.09471 > volume #34 level 0.07366 > open /Users/kgr849/Downloads/cryosparc_P48_J210_mask.mrc Opened cryosparc_P48_J210_mask.mrc as #35, grid size 224,224,224, pixel 1.5, shown at level 0.904, step 1, values float32 > volume #35 color #ffffb234 > volume #35 color #ffffb233 > open /Users/kgr849/Downloads/cryosparc_P48_J210_mask-2.mrc Opened cryosparc_P48_J210_mask-2.mrc as #36, grid size 224,224,224, pixel 1.5, shown at level 0.822, step 1, values float32 > hide #!35 models > color #36 #b2ffff55 models > hide #!34 models > hide #!36 models > open /Users/kgr849/Downloads/job049_mask_pix1p498_box224.mrc Opened job049_mask_pix1p498_box224.mrc as #37, grid size 224,224,224, pixel 1.5, shown at level 1, step 1, values float32 > volume #37 level 0.7209 > show #!14 models > vop resample #37 onGrid #1 Opened job049_mask_pix1p498_box224.mrc resampled as #38, grid size 224,224,224, pixel 1.5, shown at step 1, values float32 > ui tool show ""Fit in Map"" > fitmap #38 inMap #14 Fit map job049_mask_pix1p498_box224.mrc resampled in map hTRPM4_MSP_Science_box224_resampled.mrc using 498660 points correlation = 0.2085, correlation about mean = 0.2684, overlap = 3.793e+05 steps = 168, shift = 11, angle = 25.5 degrees Position of job049_mask_pix1p498_box224.mrc resampled (#38) relative to hTRPM4_MSP_Science_box224_resampled.mrc (#14) coordinates: Matrix rotation and translation 0.69185973 -0.72203194 0.00006443 172.44956611 0.72203194 0.69185972 -0.00009944 -69.79217177 0.00002723 0.00011532 0.99999999 5.76719537 Axis 0.00014872 0.00002576 0.99999999 Axis point 167.99277082 167.14408368 0.00000000 Rotation angle (degrees) 46.22249742 Shift along axis 5.79104377 > color #38 #ffb2ff63 models > hide #!14 models > show #!14 models > vop resample #38 onGrid #1 Opened job049_mask_pix1p498_box224.mrc resampled resampled as #39, grid size 224,224,224, pixel 1.5, shown at step 1, values float32 > volume #14 level 4.036 > color #14 #ffb2b2ff models > volume #39 color #ffb2b230 > save ""/Users/kgr849/OneDrive - University of > Copenhagen/hTRPM4/Chimera/hTRPM4_full_mask.mrc"" models #39 > volume #39 level 0.9093 > volume #39 level 0.6505 > hide #!39 models > show #!36 models > hide #!36 models > show #!36 models > hide #!36 models > show #!27 models > hide #!14 models > open /Users/kgr849/Downloads/cryosparc_P48_J213_002_volume_map.mrc Opened cryosparc_P48_J213_002_volume_map.mrc as #40, grid size 224,224,224, pixel 1.5, shown at level 0.0712, step 1, values float32 > volume #40 level 0.07994 > volume #40 level 0.09571 > show #!10 models > show #!9 models > hide #!9 models Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 88 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: Mac Model Identifier: Mac14,2 Model Number: Z15S000HZDK/A Chip: Unknown Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 10151.101.3 OS Loader Version: 10151.101.3 Software: System Software Overview: System Version: macOS 14.4.1 (23E224) Kernel Version: Darwin 23.4.0 Time since boot: 1 day, 4 hours, 28 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.9.26 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX