id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
15073	Crash in QItemSelectionModel::isSelected	chimerax-bug-report@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        macOS-14.4.1-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
{""app_name"":""ChimeraX"",""timestamp"":""2024-04-30 09:10:00.00 -0700"",""app_version"":""1.7.1"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.7.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 14.4.1 (23E224)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""D6868D44-5DC9-4C45-9DF0-45BB6019DE43""}
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 ""codeSigningMonitor"" : 1,
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 ""crashReporterKey"" : ""C35A3D9E-E230-9A00-EB4F-C65538F4BBB2"",
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 ""codeSigningTeamID"" : ""LWV8X224YF"",
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   ""name"" : ""libsystem_kernel.dylib""
 },
 {
   ""source"" : ""P"",
   ""arch"" : ""x86_64"",
   ""base"" : 140703186575360,
   ""size"" : 49144,
   ""uuid"" : ""5a006814-83f4-3c80-ab1f-528cdd08c0ff"",
   ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"",
   ""name"" : ""libsystem_pthread.dylib""
 },
 {
   ""source"" : ""P"",
   ""arch"" : ""x86_64"",
   ""base"" : 140703185182720,
   ""size"" : 557048,
   ""uuid"" : ""6d02e870-f215-36ed-bf7d-435f66996bfe"",
   ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"",
   ""name"" : ""libsystem_c.dylib""
 },
 {
   ""source"" : ""P"",
   ""arch"" : ""x86_64"",
   ""base"" : 140703186776064,
   ""size"" : 45048,
   ""uuid"" : ""56a3704c-42f6-3fb2-b45c-5371848c9400"",
   ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"",
   ""name"" : ""libsystem_platform.dylib""
 },
 {
   ""source"" : ""P"",
   ""arch"" : ""x86_64"",
   ""base"" : 140703186997248,
   ""CFBundleShortVersionString"" : ""6.9"",
   ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"",
   ""size"" : 4825085,
   ""uuid"" : ""03688667-a025-352f-81e2-612c65b6bce3"",
   ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"",
   ""name"" : ""CoreFoundation"",
   ""CFBundleVersion"" : ""2420""
 },
 {
   ""source"" : ""P"",
   ""arch"" : ""x86_64"",
   ""base"" : 140703370723328,
   ""CFBundleShortVersionString"" : ""2.1.1"",
   ""CFBundleIdentifier"" : ""com.apple.HIToolbox"",
   ""size"" : 2732028,
   ""uuid"" : ""5d06c99c-ac78-3bc4-8908-45a394e8180b"",
   ""path"" : ""\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox"",
   ""name"" : ""HIToolbox""
 },
 {
   ""source"" : ""P"",
   ""arch"" : ""x86_64"",
   ""base"" : 140703243640832,
   ""CFBundleShortVersionString"" : ""6.9"",
   ""CFBundleIdentifier"" : ""com.apple.AppKit"",
   ""size"" : 21159926,
   ""uuid"" : ""4905ef83-f061-3c82-bc30-70a4def63eee"",
   ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"",
   ""name"" : ""AppKit"",
   ""CFBundleVersion"" : ""2487.50.124""
 }
],
 ""sharedCache"" : {
 ""base"" : 140703182159872,
 ""size"" : 21474836480,
 ""uuid"" : ""b8d5ff9b-b3b6-327c-a409-07449b1e60da""
},
 ""legacyInfo"" : {
 ""threadTriggered"" : {
   ""name"" : ""CrBrowserMain"",
   ""queue"" : ""com.apple.main-thread""
 }
},
 ""logWritingSignature"" : ""c2443ba872b19c0998afcc83b947ebad16f3f566"",
 ""trialInfo"" : {
 ""rollouts"" : [
   {
     ""rolloutId"" : ""6410af69ed1e1e7ab93ed169"",
     ""factorPackIds"" : {

     },
     ""deploymentId"" : 240000011
   },
   {
     ""rolloutId"" : ""6297d96be2c9387df974efa4"",
     ""factorPackIds"" : {

     },
     ""deploymentId"" : 240000025
   }
 ],
 ""experiments"" : [
   {
     ""treatmentId"" : ""2dffbe18-a39a-4f33-ada9-2cce30af39ca"",
     ""experimentId"" : ""6384d56b96e8d228551ec182"",
     ""deploymentId"" : 400000023
   }
 ]
},
 ""reportNotes"" : [
 ""PC register does not match crashing frame (0x0 vs 0x7FF8939A2A78)""
]
}


Log:
Startup Messages  
---  
warnings | Replacing fetcher for 'ngff' and format OME-Zarr from OME-Zarr
bundle with that from OME-Zarr bundle  
Replacing fetcher for 'ngff' and format OME-Zarr from OME-Zarr bundle with
that from OME-Zarr bundle  
Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with
that from NMRSTAR bundle  

UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

   Hardware Overview:

     Model Name: Mac
     Model Identifier: Mac14,9
     Model Number: MPHH3LL/A
     Chip: Unknown
     Total Number of Cores: 10 (6 performance and 4 efficiency)
     Memory: 16 GB
     System Firmware Version: 10151.101.3
     OS Loader Version: 10151.101.3

Software:

   System Software Overview:

     System Version: macOS 14.4.1 (23E224)
     Kernel Version: Darwin 23.4.0
     Time since boot: 19 days, 23 hours, 37 minutes

Graphics/Displays:

   Apple M2 Pro:

     Chipset Model: Apple M2 Pro
     Type: GPU
     Bus: Built-In
     Total Number of Cores: 16
     Vendor: Apple (0x106b)
     Metal Support: Metal 3
     Displays:
       DELL U3423WE:
         Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD)
         UI Looks like: 3440 x 1440 @ 60.00Hz
         Main Display: Yes
         Mirror: Off
         Online: Yes


Installed Packages:
   aiobotocore: 2.12.3
   aiohttp: 3.9.5
   aioitertools: 0.11.0
   aiosignal: 1.3.1
   alabaster: 0.7.16
   annotated-types: 0.6.0
   appdirs: 1.4.4
   appnope: 0.1.3
   asciitree: 0.3.3
   asttokens: 2.4.1
   attrs: 23.2.0
   Babel: 2.14.0
   backcall: 0.2.0
   beautifulsoup4: 4.11.2
   blockdiag: 3.0.0
   blosc2: 2.0.0
   botocore: 1.34.69
   build: 0.10.0
   certifi: 2022.12.7
   cffi: 1.16.0
   cftime: 1.6.3
   charset-normalizer: 3.3.2
   ChimeraX-AddCharge: 1.5.13
   ChimeraX-AddH: 2.2.5
   ChimeraX-AlignmentAlgorithms: 2.0.1
   ChimeraX-AlignmentHdrs: 3.4.1
   ChimeraX-AlignmentMatrices: 2.1
   ChimeraX-Alignments: 2.12.2
   ChimeraX-AlphaFold: 1.0
   ChimeraX-AltlocExplorer: 1.1.1
   ChimeraX-AmberInfo: 1.0
   ChimeraX-Arrays: 1.1
   ChimeraX-ArtiaX: 0.4.6
   ChimeraX-Atomic: 1.49.1
   ChimeraX-AtomicLibrary: 12.1.5
   ChimeraX-AtomSearch: 2.0.1
   ChimeraX-AxesPlanes: 2.3.2
   ChimeraX-BasicActions: 1.1.2
   ChimeraX-BILD: 1.0
   ChimeraX-BlastProtein: 2.1.2
   ChimeraX-BondRot: 2.0.4
   ChimeraX-BugReporter: 1.0.1
   ChimeraX-BuildStructure: 2.10.5
   ChimeraX-Bumps: 1.0
   ChimeraX-BundleBuilder: 1.2.2
   ChimeraX-ButtonPanel: 1.0.1
   ChimeraX-CageBuilder: 1.0.1
   ChimeraX-CellPack: 1.0
   ChimeraX-Centroids: 1.3.2
   ChimeraX-ChangeChains: 1.1
   ChimeraX-CheckWaters: 1.3.2
   ChimeraX-ChemGroup: 2.0.1
   ChimeraX-Clashes: 2.2.4
   ChimeraX-ColorActions: 1.0.3
   ChimeraX-ColorGlobe: 1.0
   ChimeraX-ColorKey: 1.5.5
   ChimeraX-CommandLine: 1.2.5
   ChimeraX-ConnectStructure: 2.0.1
   ChimeraX-Contacts: 1.0.1
   ChimeraX-copick: 0.1.6
   ChimeraX-Core: 1.7.1
   ChimeraX-CoreFormats: 1.2
   ChimeraX-coulombic: 1.4.2
   ChimeraX-Crosslinks: 1.0
   ChimeraX-Crystal: 1.0
   ChimeraX-CrystalContacts: 1.0.1
   ChimeraX-DataFormats: 1.2.3
   ChimeraX-Dicom: 1.2
   ChimeraX-DistMonitor: 1.4
   ChimeraX-DockPrep: 1.1.3
   ChimeraX-Dssp: 2.0
   ChimeraX-EMDB-SFF: 1.0
   ChimeraX-ESMFold: 1.0
   ChimeraX-FileHistory: 1.0.1
   ChimeraX-FunctionKey: 1.0.1
   ChimeraX-Geometry: 1.3
   ChimeraX-gltf: 1.0
   ChimeraX-Graphics: 1.1.1
   ChimeraX-Hbonds: 2.4
   ChimeraX-Help: 1.2.2
   ChimeraX-HKCage: 1.3
   ChimeraX-IHM: 1.1
   ChimeraX-ImageFormats: 1.2
   ChimeraX-IMOD: 1.0
   ChimeraX-IO: 1.0.1
   ChimeraX-ItemsInspection: 1.0.1
   ChimeraX-IUPAC: 1.0
   ChimeraX-Label: 1.1.8
   ChimeraX-ListInfo: 1.2.2
   ChimeraX-Log: 1.1.6
   ChimeraX-LookingGlass: 1.1
   ChimeraX-Maestro: 1.9.1
   ChimeraX-Map: 1.1.4
   ChimeraX-MapData: 2.0
   ChimeraX-MapEraser: 1.0.1
   ChimeraX-MapFilter: 2.0.1
   ChimeraX-MapFit: 2.0
   ChimeraX-MapSeries: 2.1.1
   ChimeraX-Markers: 1.0.1
   ChimeraX-Mask: 1.0.2
   ChimeraX-MatchMaker: 2.1.2
   ChimeraX-MCopy: 1.0
   ChimeraX-MDcrds: 2.6.1
   ChimeraX-MedicalToolbar: 1.0.2
   ChimeraX-Meeting: 1.0.1
   ChimeraX-MLP: 1.1.1
   ChimeraX-mmCIF: 2.12.1
   ChimeraX-MMTF: 2.2
   ChimeraX-Modeller: 1.5.14
   ChimeraX-ModelPanel: 1.4
   ChimeraX-ModelSeries: 1.0.1
   ChimeraX-Mol2: 2.0.3
   ChimeraX-Mole: 1.0
   ChimeraX-Morph: 1.0.2
   ChimeraX-MouseModes: 1.2
   ChimeraX-Movie: 1.0
   ChimeraX-Neuron: 1.0
   ChimeraX-Nifti: 1.1
   ChimeraX-NRRD: 1.1
   ChimeraX-Nucleotides: 2.0.3
   ChimeraX-OME-Zarr: 0.5.4
   ChimeraX-OpenCommand: 1.13.1
   ChimeraX-PDB: 2.7.3
   ChimeraX-PDBBio: 1.0.1
   ChimeraX-PDBLibrary: 1.0.4
   ChimeraX-PDBMatrices: 1.0
   ChimeraX-PickBlobs: 1.0.1
   ChimeraX-Positions: 1.0
   ChimeraX-PresetMgr: 1.1
   ChimeraX-PubChem: 2.1
   ChimeraX-ReadPbonds: 1.0.1
   ChimeraX-Registration: 1.1.2
   ChimeraX-RemoteControl: 1.0
   ChimeraX-RenderByAttr: 1.1
   ChimeraX-RenumberResidues: 1.1
   ChimeraX-ResidueFit: 1.0.1
   ChimeraX-RestServer: 1.2
   ChimeraX-RNALayout: 1.0
   ChimeraX-RotamerLibMgr: 4.0
   ChimeraX-RotamerLibsDunbrack: 2.0
   ChimeraX-RotamerLibsDynameomics: 2.0
   ChimeraX-RotamerLibsRichardson: 2.0
   ChimeraX-SaveCommand: 1.5.1
   ChimeraX-SchemeMgr: 1.0
   ChimeraX-SDF: 2.0.2
   ChimeraX-Segger: 1.0
   ChimeraX-Segment: 1.0.1
   ChimeraX-SelInspector: 1.0
   ChimeraX-SeqView: 2.11
   ChimeraX-Shape: 1.0.1
   ChimeraX-Shell: 1.0.1
   ChimeraX-Shortcuts: 1.1.1
   ChimeraX-ShowSequences: 1.0.2
   ChimeraX-SideView: 1.0.1
   ChimeraX-Smiles: 2.1.2
   ChimeraX-SmoothLines: 1.0
   ChimeraX-SpaceNavigator: 1.0
   ChimeraX-StdCommands: 1.12.4
   ChimeraX-STL: 1.0.1
   ChimeraX-Storm: 1.0
   ChimeraX-StructMeasure: 1.1.2
   ChimeraX-Struts: 1.0.1
   ChimeraX-Surface: 1.0.1
   ChimeraX-SwapAA: 2.0.1
   ChimeraX-SwapRes: 2.2.2
   ChimeraX-TapeMeasure: 1.0
   ChimeraX-TaskManager: 1.0
   ChimeraX-Test: 1.0
   ChimeraX-Toolbar: 1.1.2
   ChimeraX-ToolshedUtils: 1.2.4
   ChimeraX-Topography: 1.0
   ChimeraX-ToQuest: 1.0
   ChimeraX-Tug: 1.0.1
   ChimeraX-UI: 1.33.3
   ChimeraX-uniprot: 2.3
   ChimeraX-UnitCell: 1.0.1
   ChimeraX-ViewDockX: 1.3.2
   ChimeraX-VIPERdb: 1.0
   ChimeraX-Vive: 1.1
   ChimeraX-VolumeMenu: 1.0.1
   ChimeraX-vrml: 1.0
   ChimeraX-VTK: 1.0
   ChimeraX-WavefrontOBJ: 1.0
   ChimeraX-WebCam: 1.0.2
   ChimeraX-WebServices: 1.1.3
   ChimeraX-Zone: 1.0.1
   click: 8.1.7
   cloudpickle: 3.0.0
   colorama: 0.4.6
   comm: 0.2.1
   contourpy: 1.2.0
   copick: 0.4.0
   cryptography: 42.0.5
   cxservices: 1.2.2
   cycler: 0.12.1
   Cython: 0.29.33
   dask: 2024.4.2
   debugpy: 1.8.0
   decorator: 5.1.1
   distributed: 2024.4.2
   docutils: 0.19
   executing: 2.0.1
   fasteners: 0.19
   filelock: 3.9.0
   fonttools: 4.47.2
   frozenlist: 1.4.1
   fsspec: 2024.3.1
   funcparserlib: 2.0.0a0
   geomdl: 5.3.1
   glfw: 2.6.4
   grako: 3.16.5
   h5py: 3.10.0
   hatchling: 1.24.2
   html2text: 2020.1.16
   idna: 3.6
   ihm: 0.38
   imagecodecs: 2023.9.18
   imageio: 2.34.1
   imagesize: 1.4.1
   importlib-metadata: 7.1.0
   ipykernel: 6.23.2
   ipython: 8.14.0
   ipython-genutils: 0.2.0
   ipywidgets: 8.1.1
   jedi: 0.18.2
   Jinja2: 3.1.2
   jmespath: 1.0.1
   jupyter-client: 8.2.0
   jupyter-core: 5.7.1
   jupyterlab-widgets: 3.0.9
   kiwisolver: 1.4.5
   lazy-loader: 0.4
   line-profiler: 4.0.2
   locket: 1.0.0
   lxml: 4.9.2
   lz4: 4.3.2
   MarkupSafe: 2.1.4
   matplotlib: 3.7.2
   matplotlib-inline: 0.1.6
   msgpack: 1.0.4
   multidict: 6.0.5
   nest-asyncio: 1.6.0
   netCDF4: 1.6.2
   networkx: 3.1
   nibabel: 5.0.1
   nptyping: 2.5.0
   numcodecs: 0.12.1
   numexpr: 2.8.8
   numpy: 1.25.1
   ome-zarr: 0.8.3
   openvr: 1.23.701
   packaging: 24.0
   pandas: 2.2.2
   ParmEd: 3.4.3
   parso: 0.8.3
   partd: 1.4.1
   pathspec: 0.12.1
   pep517: 0.13.0
   pexpect: 4.9.0
   pickleshare: 0.7.5
   pillow: 10.2.0
   pip: 23.0
   pkginfo: 1.9.6
   platformdirs: 4.1.0
   pluggy: 1.5.0
   prompt-toolkit: 3.0.43
   psutil: 5.9.5
   ptyprocess: 0.7.0
   pure-eval: 0.2.2
   py-cpuinfo: 9.0.0
   pyarrow: 16.0.0
   pycollada: 0.7.2
   pycparser: 2.22
   pydantic: 2.7.1
   pydantic-core: 2.18.2
   pydicom: 2.3.0
   Pygments: 2.16.1
   pynrrd: 1.0.0
   PyOpenGL: 3.1.7
   PyOpenGL-accelerate: 3.1.7
   pyopenxr: 1.0.2801
   pyparsing: 3.0.9
   pyproject-hooks: 1.0.0
   PyQt6-commercial: 6.3.1
   PyQt6-Qt6: 6.3.2
   PyQt6-sip: 13.4.0
   PyQt6-WebEngine-commercial: 6.3.1
   PyQt6-WebEngine-Qt6: 6.3.2
   pyspnego: 0.10.2
   python-dateutil: 2.8.2
   pytz: 2023.3.post1
   PyYAML: 6.0.1
   pyzmq: 25.1.2
   qtconsole: 5.4.3
   QtPy: 2.4.1
   RandomWords: 0.4.0
   requests: 2.31.0
   s3fs: 2024.3.1
   scikit-image: 0.23.2
   scipy: 1.11.1
   setuptools: 67.4.0
   setuptools-scm: 7.0.5
   sfftk-rw: 0.7.3
   six: 1.16.0
   smbprotocol: 1.13.0
   snowballstemmer: 2.2.0
   sortedcontainers: 2.4.0
   soupsieve: 2.5
   sphinx: 6.1.3
   sphinx-autodoc-typehints: 1.22
   sphinxcontrib-applehelp: 1.0.8
   sphinxcontrib-blockdiag: 3.0.0
   sphinxcontrib-devhelp: 1.0.6
   sphinxcontrib-htmlhelp: 2.0.5
   sphinxcontrib-jsmath: 1.0.1
   sphinxcontrib-qthelp: 1.0.7
   sphinxcontrib-serializinghtml: 1.1.10
   stack-data: 0.6.3
   starfile: 0.5.7
   superqt: 0.5.0
   tables: 3.8.0
   tblib: 3.0.0
   tcia-utils: 1.5.1
   tifffile: 2023.7.18
   tinyarray: 1.2.4
   tomli: 2.0.1
   toolz: 0.12.1
   tornado: 6.4
   traitlets: 5.9.0
   trimesh: 4.3.1
   trove-classifiers: 2024.4.10
   typing-extensions: 4.9.0
   tzdata: 2023.4
   urllib3: 2.1.0
   wcwidth: 0.2.13
   webcolors: 1.12
   wheel: 0.38.4
   wheel-filename: 1.4.1
   widgetsnbextension: 4.0.9
   wrapt: 1.16.0
   yarl: 1.9.4
   zarr: 2.17.2
   zict: 3.0.0
   zipp: 3.18.1


}}}
"	defect	closed	normal		Window Toolkit		can't reproduce		Tom Goddard				all	ChimeraX