id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15069 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/pujanajmera/Downloads/MoreCys.xyz opened MoreCys.xyz as an XYZ coordinate file > select /a:1@H37 1 atom, 1 residue, 1 model selected > select up 84 atoms, 83 bonds, 1 residue, 1 model selected > select up 84 atoms, 83 bonds, 1 residue, 1 model selected > select clear > open /Users/pujanajmera/Downloads/OneCys.xyz opened OneCys.xyz as an XYZ coordinate file > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 22 atoms, 21 bonds, 1 residue, 1 model selected > hide #2 models > hide #1 models > close > open /Users/pujanajmera/Downloads/2Z8Q_H.pdb Summary of feedback from opening /Users/pujanajmera/Downloads/2Z8Q_H.pdb --- warnings | CONECT record to nonexistent atom: (177, 183) CONECT record to nonexistent atom: (215, 220) CONECT record to nonexistent atom: (261, 271) CONECT record to nonexistent atom: (917, 922) Chain information for 2Z8Q_H.pdb #1 --- Chain | Description A | No description available > ui tool show ""Altloc Explorer"" > hbonds /A:10-11,17-21,45-46,48-49,54-55,65-66 & @@num_alt_locs>1 interModel > false reveal true name ""altloc H-bonds"" updateGroup true 13 hydrogen bonds found > altlocs change B /A:10 Changed /A THR 10 to alternate location B > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /A:10 Changed /A THR 10 to alternate location A > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > altlocs change B /A:10 Changed /A THR 10 to alternate location B > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /A:10 Changed /A THR 10 to alternate location A > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > altlocs change B /A:11 Changed /A CYS 11 to alternate location B > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /A:11 Changed /A CYS 11 to alternate location A > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change B /A:11 Changed /A CYS 11 to alternate location B > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /A:11 Changed /A CYS 11 to alternate location A > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change B /A:17 Changed /A CYS 17 to alternate location B > hbonds /A:18 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 0 hydrogen bonds found > hbonds /A:17 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > altlocs change A /A:17 Changed /A CYS 17 to alternate location A > hbonds /A:18 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 0 hydrogen bonds found > hbonds /A:17 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change B /A:11 Changed /A CYS 11 to alternate location B > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /A:11 Changed /A CYS 11 to alternate location A > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > show target ab > altlocs change B /A:10 Changed /A THR 10 to alternate location B > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /A:10 Changed /A THR 10 to alternate location A > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > altlocs change B /A:11 Changed /A CYS 11 to alternate location B > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /A:11 Changed /A CYS 11 to alternate location A > hbonds /A:10 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > hbonds /A:11 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change B /A:17 Changed /A CYS 17 to alternate location B > hbonds /A:18 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 0 hydrogen bonds found > hbonds /A:17 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > altlocs change A /A:17 Changed /A CYS 17 to alternate location A > hbonds /A:18 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 0 hydrogen bonds found > hbonds /A:17 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change B /A:17 Changed /A CYS 17 to alternate location B > hbonds /A:18 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 0 hydrogen bonds found > hbonds /A:17 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > close #1 > open /Users/pujanajmera/TmoleXProject_1/Downloads/2Z8Q_H_renum.pdb Chain information for 2Z8Q_H_renum.pdb #1 --- Chain | Description A | No description available > open /Users/pujanajmera/TmoleXProject_1/Downloads/2z8q.pdb > /Users/pujanajmera/Downloads/2z8q.pdb > /Users/pujanajmera/TmoleXProject_1/Downloads/2Z8Q_H.pdb > /Users/pujanajmera/TmoleXProject_1/Downloads/1_2Z8Q_hydrogenated_WT_noCO2.pdb > /Users/pujanajmera/TmoleXProject/Downloads/1_2Z8Q_hydrogenated_WT_noCO2.pdb > /Users/pujanajmera/Downloads/1_2Z8Q_hydrogenated_WT_noCO2.pdb Chain information for 2z8q.pdb #2 --- Chain | Description A | No description available Chain information for 2z8q.pdb #3 --- Chain | Description A | No description available Chain information for 2Z8Q_H.pdb #4 --- Chain | Description A | No description available Chain information for 1_2Z8Q_hydrogenated_WT_noCO2.pdb #5 --- Chain | Description B | No description available Chain information for 1_2Z8Q_hydrogenated_WT_noCO2.pdb #6 --- Chain | Description B | No description available Chain information for 1_2Z8Q_hydrogenated_WT_noCO2.pdb #7 --- Chain | Description B | No description available > close #1 > hide #!3 models > hide #!4 models > hide #!5 models > hide #!6 models > hide #!7 models > show #!3 models > hide #!2 models > close #2-3 > show #!4 models > close #4 > show #!5 models > show #!6 models > show #!7 models > hide #!5 models > hide #!6 models > show #!6 models > show #!5 models > hide #!6 models > show #!6 models > hide #!5 models > hide #!7 models > show #!7 models > hide #!6 models > show #!5 models > hide #!7 models > show #!6 models > show #!7 models > select add #7 968 atoms, 979 bonds, 3 pseudobonds, 67 residues, 2 models selected > select subtract #7 Nothing selected > select add #6 968 atoms, 979 bonds, 3 pseudobonds, 67 residues, 2 models selected > select subtract #6 Nothing selected > select add #5 968 atoms, 979 bonds, 3 pseudobonds, 67 residues, 2 models selected > select subtract #5 Nothing selected > close #5-6 > hbonds /B:19-20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 2 hydrogen bonds found > altlocs change B /B:19 Changed /B SER 19 to alternate location B > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /B:19 Changed /B SER 19 to alternate location A > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > show /B:19 > view /B:19 > altlocs change B /B:19 Changed /B SER 19 to alternate location B > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /B:19 Changed /B SER 19 to alternate location A > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > show /B:20 > view /B:20 > altlocs change B /B:20 Changed /B LEU 20 to alternate location B > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /B:20 Changed /B LEU 20 to alternate location A > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change B /B:20 Changed /B LEU 20 to alternate location B > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /B:20 Changed /B LEU 20 to alternate location A > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change B /B:19 Changed /B SER 19 to alternate location B > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > altlocs change A /B:20 Changed /B LEU 20 to alternate location A > hbonds /B:19 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > hbonds /B:20 & @@num_alt_locs>1 interModel false reveal true name ""altloc > H-bonds"" updateGroup true 1 hydrogen bonds found > open /Users/pujanajmera/Downloads/1_hivprot_run1.pdb Chain information for 1_hivprot_run1.pdb #1 --- Chain | Description Z | No description available > view #1 clip false > hide #!7 models > show #1 target ab Drag select of 10 atoms, 3 residues, 5 bonds > select clear > ui mousemode right zoom > select protein 4237 atoms, 4271 bonds, 2 pseudobonds, 273 residues, 3 models selected > select add #7 4245 atoms, 4283 bonds, 5 pseudobonds, 274 residues, 4 models selected > select subtract #7 3277 atoms, 3304 bonds, 207 residues, 1 model selected > hide #* target a > show sel target ab > hide sel target a > select clear > select #1/Z:25 12 atoms, 11 bonds, 1 residue, 1 model selected > select #1/Z:124 13 atoms, 12 bonds, 1 residue, 1 model selected > select add #1/Z:25 25 atoms, 23 bonds, 2 residues, 1 model selected > show sel target ab > select sel : show sel target ab > select clear > select #1/Z:203 21 atoms, 21 bonds, 1 residue, 1 model selected > select up 169 atoms, 170 bonds, 10 residues, 1 model selected > select subtract #1/Z:198 148 atoms, 149 bonds, 9 residues, 1 model selected > hide (sel-residues & (protein|nucleic)) target a > cartoon hide sel-residues > show (sel-residues & backbone) target ab > select clear > select #1/Z:203@CA 1 atom, 1 residue, 1 model selected > show sel target ab > show (sel-residues & sidechain) target ab > select clear > select #1/Z:124@OD2 1 atom, 1 residue, 1 model selected > select up 13 atoms, 12 bonds, 1 residue, 1 model selected > select clear > select add #1/Z:124@HD2 1 atom, 1 residue, 1 model selected > select sel @ show sel target ab > select clear > select #1/Z:124@HD2 1 atom, 1 residue, 1 model selected > select clear > show #1 target ab > select #1/Z:124@HD2 1 atom, 1 residue, 1 model selected > select sel @ select sel @ select sel @ select sel @ select sel @ select sel @ Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,3 Model Number: MKGP3LL/A Chip: Unknown Total Number of Cores: 8 (6 performance and 2 efficiency) Memory: 16 GB System Firmware Version: 8422.121.1 OS Loader Version: 8422.121.1 Software: System Software Overview: System Version: macOS 13.4 (22F66) Kernel Version: Darwin 22.5.0 Time since boot: 109 days, 34 minutes Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 14 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.9.26 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 MolecularDynamicsViewer: 1.4 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 Send2Trash: 1.8.2 SEQCROW: 1.6.6 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX