id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 14663 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x0000700023c13000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 576 in _handle_results File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000700022c10000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 528 in _handle_tasks File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000700021c0d000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py"", line 416 in select File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py"", line 936 in wait File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 499 in _wait_for_updates File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 519 in _handle_workers File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000700020c0a000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000070001fc07000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000070001ec04000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000070001dc01000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000070001cbfe000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000070001bbfb000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000070001abf8000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000700019bf5000 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Current thread 0x00007ff84e276700 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2024-02-28 17:23:27.00 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Bytes before following region: 140737486921704\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7fffffea2000-7fffffea3000 [ 4K] r-x\/r-x SM=SHM "", ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000000018"",""rawCodes"":[1,24],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000000018""}, ""termination"" : {""flags"":0,""code"":11,""namespace"":""SIGNAL"",""indicator"":""Segmentation fault: 11"",""byProc"":""ChimeraX"",""byPid"":64559}, ""vmregioninfo"" : ""0x18 is not in any region. 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\n__TEXT 956.5M 778 \ndyld private memory 388K 4 \nmapped file 109.0M 51 \nshared memory 3000K 31 \n=========== ======= ======= \nTOTAL 2.8G 3442 \nTOTAL, minus reserved VM space 2.6G 3442 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""e993725933545342fc545dce583bb64b397bf20b"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""62fe74515312cd4599bd3c80"", ""factorPackIds"" : { ""MYRIAD_BOOSTS"" : ""62fe74805312cd4599bd3c81"" }, ""deploymentId"" : 240000006 }, { ""rolloutId"" : ""62699e1ec1ff2978b47f6c3b"", ""factorPackIds"" : { ""SIRI_FIND_MY_CONFIGURATION_FILES"" : ""652805151bce5442b8d752e1"" }, ""deploymentId"" : 240000031 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""/Users/irizarr1/Desktop/LTGFB1 vs LTGFB3.cxs"" Log from Tue Nov 14 12:13:01 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""/Users/irizarr1/Desktop/LTGFB1 vs LTGFB3.cxs"" Log from Mon Nov 13 15:54:41 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/irizarr1/Desktop/Structures/CryoEM > Stuff/Krios/DenoisedModel/TGFB3_ISOLDE_06_ALR_19_real_space_refined_005.pdb"" > format pdb Chain information for TGFB3_ISOLDE_06_ALR_19_real_space_refined_005.pdb #1 --- Chain | Description A | No description available B | No description available > open ""/Users/irizarr1/Desktop/Structures/TGFb1/Boar proTGFb1.pdb"" format pdb Boar proTGFb1.pdb title: Crystal structure of pro-TGF β 1 [more info...] Chain information for Boar proTGFb1.pdb #2 --- Chain | Description | UniProt A B C D | transforming growth factor β-1 | TGFB1_PIG 1-361 Non-standard residues in Boar proTGFb1.pdb #2 --- NAG — 2-acetamido-2-deoxy-β-D-glucopyranose > select #2/A:0-361 2720 atoms, 2788 bonds, 3 pseudobonds, 340 residues, 2 models selected > hide sel atoms > hide sel cartoons > select #2/B:1-361 2638 atoms, 2702 bonds, 4 pseudobonds, 330 residues, 2 models selected > hide sel cartoons > hide sel atoms > select #2/A:0-361 2720 atoms, 2788 bonds, 3 pseudobonds, 340 residues, 2 models selected > select #2/B:1-361 2638 atoms, 2702 bonds, 4 pseudobonds, 330 residues, 2 models selected > select #2/C:-1-361 2744 atoms, 2814 bonds, 3 pseudobonds, 343 residues, 2 models selected > select #2/D:0-361 2741 atoms, 2810 bonds, 3 pseudobonds, 342 residues, 2 models selected > select :NAG 436 atoms, 444 bonds, 20 residues, 2 models selected > select #2/A:0-361 2720 atoms, 2788 bonds, 3 pseudobonds, 340 residues, 2 models selected > select #2/C:-1-361 2744 atoms, 2814 bonds, 3 pseudobonds, 343 residues, 2 models selected > select add #2 10955 atoms, 11240 bonds, 13 pseudobonds, 1363 residues, 2 models selected > select subtract #2 Nothing selected > select add #2 10955 atoms, 11240 bonds, 13 pseudobonds, 1363 residues, 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #2,1,0,0,43.102,0,1,0,42.672,0,0,1,78.094 > view matrix models #2,1,0,0,116.59,0,1,0,70.277,0,0,1,83.907 > view matrix models #2,1,0,0,118.19,0,1,0,66.583,0,0,1,86.533 > view matrix models #2,1,0,0,139.93,0,1,0,17.394,0,0,1,112.09 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.93718,0.23199,0.26051,117.79,-0.25942,0.96278,0.075884,0.90286,-0.23321,-0.1387,0.96248,105.84 > view matrix models > #2,0.85831,0.30905,0.40963,105.02,-0.31297,0.94791,-0.059384,3.6642,-0.40665,-0.077232,0.91031,96.125 > view matrix models > #2,0.78881,-0.25785,0.55794,115.43,0.24774,0.96413,0.095308,28.208,-0.5625,0.063046,0.82439,85.898 > view matrix models > #2,-0.25365,0.94797,-0.1924,43.135,0.21084,-0.13994,-0.96745,107.38,-0.94404,-0.28596,-0.16438,115.71 > view matrix models > #2,-0.56149,0.61228,-0.55663,52.342,0.61287,-0.14426,-0.77691,122.08,-0.55599,-0.77737,-0.29425,159.32 > view matrix models > #2,-0.7336,0.394,-0.55371,50.504,0.37586,-0.44359,-0.81361,121.09,-0.56618,-0.80498,0.17733,141.39 > view matrix models > #2,-0.6855,0.36378,-0.63067,57.255,0.43688,-0.48742,-0.75601,123.77,-0.58243,-0.79378,0.1752,140.16 > view matrix models > #2,-0.63905,0.32972,-0.69491,63.579,0.48555,-0.52776,-0.69693,125.6,-0.59653,-0.78279,0.17717,138.9 > view matrix models > #2,-0.63902,0.32976,-0.69492,63.58,0.4856,-0.5277,-0.69694,125.6,-0.59653,-0.78281,0.17708,138.91 > view matrix models > #2,-0.67531,0.28856,-0.67873,62.31,0.43532,-0.58691,-0.68266,124.24,-0.59535,-0.75648,0.27073,134.39 > view matrix models > #2,-0.70827,0.34397,-0.61647,56.079,0.3745,-0.55717,-0.74115,122.06,-0.59842,-0.7558,0.26581,134.38 > view matrix models > #2,-0.6769,0.30427,-0.67024,61.341,0.42153,-0.58622,-0.69185,123.79,-0.60342,-0.75084,0.26855,133.82 > view matrix models > #2,-0.61037,0.23418,-0.75671,70.962,0.49482,-0.63324,-0.59511,125.8,-0.61855,-0.73767,0.27063,132.42 > view matrix models > #2,-0.74291,0.35372,-0.5683,51.894,0.34619,-0.5236,-0.77846,120.77,-0.57292,-0.77507,0.26653,136.47 > view matrix models > #2,-0.74202,0.3518,-0.57066,52.101,0.34912,-0.52391,-0.77694,120.88,-0.5723,-0.77573,0.26593,136.55 > view matrix models > #2,-0.77273,0.43687,-0.46048,42.974,0.21368,-0.50407,-0.83681,115.08,-0.59769,-0.74502,0.29616,133.01 > view matrix models > #2,-0.7464,0.40942,-0.52465,47.906,0.26003,-0.54627,-0.79622,117.54,-0.6126,-0.73072,0.30128,131.48 > view matrix models > #2,-0.75956,0.39524,-0.51658,47.337,0.2411,-0.56654,-0.78797,116.85,-0.6041,-0.72306,0.33503,130.37 > view matrix models > #2,-0.76829,0.39117,-0.50667,46.598,0.24051,-0.55714,-0.79483,116.76,-0.5932,-0.73252,0.33396,131.35 > ui mousemode right translate > ui mousemode right ""move picked models"" > ui mousemode right ""translate selected models"" > view matrix models > #2,-0.76829,0.39117,-0.50667,129.85,0.24051,-0.55714,-0.79483,225.55,-0.5932,-0.73252,0.33396,204.11 > select add #1 21868 atoms, 22290 bonds, 21 pseudobonds, 2024 residues, 4 models selected > select subtract #2 10913 atoms, 11050 bonds, 8 pseudobonds, 661 residues, 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.99626,-0.044242,0.074154,-3.625,0.045883,0.99874,-0.020567,-3.2674,-0.07315,0.023892,0.99703,7.1041 > view matrix models > #1,0.99593,-0.04683,0.077032,-3.6189,0.046239,0.99889,0.0094298,-7.4514,-0.077387,-0.0058295,0.99698,11.766 > view matrix models > #1,0.99548,0.074003,0.059496,-17.677,-0.074913,0.9971,0.013208,8.8047,-0.058346,-0.017606,0.99814,10.621 > view matrix models > #1,0.90081,0.43262,0.037153,-50.764,-0.43401,0.89971,0.04645,66.461,-0.013332,-0.057967,0.99823,9.9992 > ui mousemode right ""translate selected models"" > view matrix models > #1,0.90081,0.43262,0.037153,-47.628,-0.43401,0.89971,0.04645,70.682,-0.013332,-0.057967,0.99823,13.482 > view matrix models > #1,0.90081,0.43262,0.037153,-47.946,-0.43401,0.89971,0.04645,70.327,-0.013332,-0.057967,0.99823,12.418 > select subtract #1 Nothing selected > ui mousemode right zoom > align #2 toAtoms #1 Unequal number of atoms to pair, 10955 and 10913 > fitmap #2 to #1 Expected a keyword > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A Alignment identifier is 1/A > sequence chain #1/B Alignment identifier is 1/B > fitmap #2 to #1 Expected a keyword > select > #1/A:33-50,67-77,96-99,126-128,136-145,205-213,215-217,324-328,358-368 1218 atoms, 1217 bonds, 74 residues, 1 model selected > select add #1 10913 atoms, 11050 bonds, 8 pseudobonds, 661 residues, 2 models selected > select subtract #1 Nothing selected > select > #1/B:33-50,67-86,96-99,137-145,180-182,205-213,272-274,361-363,365-368 1195 atoms, 1195 bonds, 73 residues, 1 model selected > select > #1/A:104-109,129-132,146-155,165-173,183-192,198-203,221-225,277-282,377-380,386-391,396-401,409-412 1305 atoms, 1309 bonds, 76 residues, 1 model selected > select > #1/A:33-50,67-77,96-99,126-128,136-145,205-213,215-217,324-328,358-368 1218 atoms, 1217 bonds, 74 residues, 1 model selected > select add #1 10913 atoms, 11050 bonds, 8 pseudobonds, 661 residues, 2 models selected > select subtract #1 Nothing selected > ui mousemode right translate > set bgColor white > lighting simple > graphics silhouettes true > select add #1 10913 atoms, 11050 bonds, 8 pseudobonds, 661 residues, 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.90065,0.43309,0.035687,-47.785,-0.43437,0.89962,0.044776,70.619,-0.012713,-0.055829,0.99836,12.024 > view matrix models > #1,0.89909,0.43766,0.0099126,-44.657,-0.43777,0.8989,0.018078,74.848,-0.00099829,-0.020593,0.99979,5.4134 > view matrix models > #1,0.90016,0.43471,0.027127,-46.766,-0.43547,0.89949,0.035886,72.008,-0.0088006,-0.044116,0.99899,9.8025 > ui mousemode right ""translate selected models"" > view matrix models > #1,0.90016,0.43471,0.027127,-45.183,-0.43547,0.89949,0.035886,73.21,-0.0088006,-0.044116,0.99899,9.5743 > save ""/Users/irizarr1/Desktop/LTGFB1 vs LTGFB3.cxs"" ——— End of log from Mon Nov 13 15:54:41 2023 ——— opened ChimeraX session > select subtract #1 Nothing selected > lighting simple > lighting flat > graphics silhouettes false > graphics silhouettes true > lighting simple > lighting flat > lighting soft > lighting simple > graphics silhouettes false > set bgColor gray > set bgColor white > set bgColor black > graphics silhouettes true > graphics silhouettes false > lighting soft > ui mousemode right select Drag select of 34 atoms, 36 bonds > select clear Drag select of 42 atoms, 43 bonds > hide sel atoms > save ""/Users/irizarr1/Desktop/LTGFB1 vs LTGFB3.cxs"" ——— End of log from Tue Nov 14 12:13:01 2023 ——— opened ChimeraX session Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-20.6.4 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine OpenGL vendor: Intel Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,2 Processor Name: Quad-Core Intel Core i5 Processor Speed: 2 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 512 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 2020.41.1.0.0 (iBridge: 21.16.1069.0.0,0) OS Loader Version: 577.140.2~15 Software: System Software Overview: System Version: macOS 13.6.1 (22G313) Kernel Version: Darwin 22.6.0 Time since boot: 1 day, 18 hours, 38 minutes Graphics/Displays: Intel Iris Plus Graphics: Chipset Model: Intel Iris Plus Graphics Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x8a53 Revision ID: 0x0007 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.21.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.6.0 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX