id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 14570 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-14.3-arm64-arm-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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All rights reserved. How to cite UCSF ChimeraX > open /Users/flogeg/Downloads/6apb.cif format mmcif 6apb.cif title: Crystal Structure of Non-Neutralizing Infant Antibody ADI-14359 in Complex with Postfusion RSV F Glycoprotein [more info...] Chain information for 6apb.cif #1 --- Chain | Description | UniProt A B C | Fusion glycoprotein F0,Fusion glycoprotein F0 | Q84850_HRSV 1-146, A0A1P8J9V4_HRSV 147-513 H | IgG H chain | L | ADI-14359 Fab Light Chain | Non-standard residues in 6apb.cif #1 --- NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) > close > open /Users/flogeg/Downloads/5wb0.cif 5wb0.cif title: Crystal structure of human metapneumovirus fusion glycoprotein stabilized in the prefusion state [more info...] Chain information for 5wb0.cif #1 --- Chain | Description | UniProt F | Fusion glycoprotein F0 | Q1A2Z0_9MONO 1-489 Non-standard residues in 5wb0.cif #1 --- BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose) MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose) NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) SO4 — sulfate ion 5wb0.cif mmCIF Assemblies --- 1| author_and_software_defined_assembly > sym #1 assembly 1 Made 3 copies for 5wb0.cif assembly 1 > select #1 3602 atoms, 3525 bonds, 1 pseudobond, 588 residues, 2 models selected > hide #!2.1-3 atoms > sym #2.1 5wb0.cif mmCIF Assemblies --- > log metadata #2.1 No models had metadata > log chains #2.1 Chain information for 5wb0.cif #2.1 --- Chain | Description | UniProt F | Fusion glycoprotein F0 | Q1A2Z0_9MONO 1-489 > view #2.1 clip false > show #!2.1 target m > sym #1 5wb0.cif mmCIF Assemblies --- 1| author_and_software_defined_assembly| 3 copies of chains A,B,F > log metadata #1 Metadata for 5wb0.cif #1 --- Title | Crystal structure of human metapneumovirus fusion glycoprotein stabilized in the prefusion state Citation | Battles, M.B., Mas, V., Olmedillas, E., Cano, O., Vazquez, M., Rodriguez, L., Melero, J.A., McLellan, J.S. (2017). Structure and immunogenicity of pre-fusion-stabilized human metapneumovirus F glycoprotein. Nat Commun, 8, 1528-1528. PMID: 29142300. DOI: 10.1038/s41467-017-01708-9 Non-standard residues | BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose) MAN — alpha-D-mannopyranose (alpha-D-mannose; D-mannose; mannose) NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) SO4 — sulfate ion Gene source | Human metapneumovirus Experimental method | X-ray diffraction Resolution | 2.600Å > log chains #1 Chain information for 5wb0.cif #1 --- Chain | Description | UniProt F | Fusion glycoprotein F0 | Q1A2Z0_9MONO 1-489 > sequence chain #1/F Alignment identifier is 1/F > show #!2 target m > open /Users/flogeg/Downloads/4jhw.cif 4jhw.cif title: Crystal Structure of Respiratory Syncytial Virus Fusion Glycoprotein Stabilized in the Prefusion Conformation by Human Antibody D25 [more info...] Chain information for 4jhw.cif #3 --- Chain | Description | UniProt F | Fusion glycoprotein F0 | FUS_HRSVA 26-136 137-513 H | D25 antigen-binding fragment heavy chain | L | D25 light chain | 4jhw.cif mmCIF Assemblies --- 1| author_and_software_defined_assembly > select up 3602 atoms, 3525 bonds, 1 pseudobond, 588 residues, 2 models selected > select up 10380 atoms, 10439 bonds, 1 pseudobond, 1474 residues, 4 models selected > select up 10380 atoms, 10439 bonds, 1 pseudobond, 1474 residues, 4 models selected > sym #3 assembly 1 Made 3 copies for 4jhw.cif assembly 1 > select #4:F,H Nothing selected > select #4:F Nothing selected > select #4 /F 10428 atoms, 10596 bonds, 3 pseudobonds, 1347 residues, 6 models selected > select #4 /l,H 9906 atoms, 10146 bonds, 1311 residues, 3 models selected > hide sel cartoons > matchmaker #2 to #4 Specify a single 'to' model only > matchmaker #2 to #4.1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4jhw.cif, chain F (#4.1) with 5wb0.cif, chain F (#2.1), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) Matchmaker 4jhw.cif, chain F (#4.1) with 5wb0.cif, chain F (#2.2), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) Matchmaker 4jhw.cif, chain F (#4.1) with 5wb0.cif, chain F (#2.3), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) > ui mousemode right rotate > matchmaker #2.1-2.3 to #4 Specify a single 'to' model only > matchmaker #2 to #4.2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4jhw.cif, chain F (#4.2) with 5wb0.cif, chain F (#2.1), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) Matchmaker 4jhw.cif, chain F (#4.2) with 5wb0.cif, chain F (#2.2), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) Matchmaker 4jhw.cif, chain F (#4.2) with 5wb0.cif, chain F (#2.3), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) > matchmaker #1 to #4 Specify a single 'to' model only > matchmaker #1 to #3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4jhw.cif, chain F (#3) with 5wb0.cif, chain F (#1), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) > show #!1 models > hide #!2 models > hide #!2.1 models > hide #!2.2 models > hide #!2.3 models > show #!2 models > hide #!4 models > show #!3 models > hide #!3 models > show #!4 models > select add #4 20334 atoms, 20742 bonds, 3 pseudobonds, 2658 residues, 7 models selected > select subtract #4 Nothing selected > hide #!2 models > show #!3 models > hide #!4 models > select #3 /H, L 3302 atoms, 3382 bonds, 437 residues, 1 model selected > hide sel cartoons > close #2 > close #4 > hide sel atoms > select #1 3602 atoms, 3525 bonds, 1 pseudobond, 588 residues, 2 models selected > hide sel atoms > select #3 6778 atoms, 6914 bonds, 1 pseudobond, 886 residues, 2 models selected > hide sel atoms > sym #1 assembly 1 Made 3 copies for 5wb0.cif assembly 1 > sym #13assembly 1 Missing or invalid ""structures"" argument: invalid atomic structures specifier > sym #3 assembly 1 Made 3 copies for 4jhw.cif assembly 1 > select #4 / Expected a keyword > select #4 /L,H 9906 atoms, 10146 bonds, 1311 residues, 3 models selected > hide sel atoms > hide sel surfaces > matchmaker #2.1 to #4.1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4jhw.cif, chain F (#4.1) with 5wb0.cif, chain F (#2.1), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) > matchmaker #2.2 to #4.2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4jhw.cif, chain F (#4.2) with 5wb0.cif, chain F (#2.2), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) > matchmaker #2.3 to #4.3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4jhw.cif, chain F (#4.3) with 5wb0.cif, chain F (#2.3), sequence alignment score = 1209.1 RMSD between 336 pruned atom pairs is 1.060 angstroms; (across all 432 pairs: 2.140) > ui mousemode right ""move picked models"" > view matrix models > #2.3,-0.88605,-0.37356,0.27453,27.386,-0.37808,0.23961,-0.89422,159.48,0.26826,-0.89612,-0.35355,3.1743 > undo > select #3 6778 atoms, 6914 bonds, 1 pseudobond, 886 residues, 2 models selected > select #4 20334 atoms, 20742 bonds, 3 pseudobonds, 2658 residues, 7 models selected > hide sel atoms > select #2 10806 atoms, 10575 bonds, 3 pseudobonds, 1764 residues, 7 models selected > hide sel atoms > ~select Nothing selected > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""move picked models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""move picked models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""move picked models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected atoms"" > ui mousemode right ""move picked models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""move picked models"" > select #2 10806 atoms, 10575 bonds, 3 pseudobonds, 1764 residues, 7 models selected > color sel #4DB5BC > select #4 20334 atoms, 20742 bonds, 3 pseudobonds, 2658 residues, 7 models selected > color sel #B84145 > ¨s Unknown command: ¨s > ~select Nothing selected > movie record > turn y 2 180 > wait 180 > movie encode /Users/flogeg/Desktop/movie1.mp4 Movie saved to /Users/flogeg/Desktop/movie1.mp4 > view orient > graphics silhouettes true > graphics silhouettes false > graphics silhouettes true > save /Users/flogeg/Desktop/RSV-MPV-overlay.tif width 1344 height 903 > supersample 3 transparentBackground true > save /Users/flogeg/Desktop/RSV-MPV-overlay.cxs > open /Users/flogeg/Desktop/RSV-MPV-overlay.cxs format session opened ChimeraX session > color #2.1 #a1a1a1ff > open /Users/flogeg/Desktop/PreF.cxs opened ChimeraX session > select > #1/F:30-33,38-48,51-60,176-181,185-194,243-244,286-289,296-305,309-318,321-322,333-336,340-344,349-352,358-361,364-367,373-375,395-398,404-407,411-415,422-426,430-434,439-443,449-452,455-458,466-469 1030 atoms, 1031 bonds, 133 residues, 1 model selected > ~select /2:26-44 1030 atoms, 1031 bonds, 133 residues, 2 models selected > ~select #2:26-44 1030 atoms, 1031 bonds, 133 residues, 2 models selected > select #2:26-44 1374 atoms, 1407 bonds, 171 residues, 3 models selected > color sel #4DB5BC > select #2:313-318 162 atoms, 168 bonds, 18 residues, 3 models selected > color sel #4DB5BC > select > #1/F:73-95,148-159,162-172,195-210,216-240,253-262,267-284,376-385,473-478,491-513 1235 atoms, 1236 bonds, 154 residues, 1 model selected > select #2:313-318 162 atoms, 168 bonds, 18 residues, 3 models selected > select #2:380-394 369 atoms, 378 bonds, 45 residues, 3 models selected > select #2:313-318 162 atoms, 168 bonds, 18 residues, 3 models selected > select #2:380-394 369 atoms, 378 bonds, 45 residues, 3 models selected > color sel #4DB5BC > select up 10428 atoms, 10596 bonds, 1347 residues, 6 models selected > select #2:45-54 735 atoms, 750 bonds, 93 residues, 3 models selected > color sel #FF876F > select #2:301-312 276 atoms, 282 bonds, 36 residues, 3 models selected > color sel #FF876F > select #2:337-353 405 atoms, 420 bonds, 51 residues, 3 models selected > color sel #FF876F > select #2:359-378 468 atoms, 471 bonds, 60 residues, 3 models selected > color sel #FF876F > select #2:55-62 546 atoms, 552 bonds, 72 residues, 3 models selected > color sel #870052 > select #2:146-194 3252 atoms, 3297 bonds, 441 residues, 3 models selected > color sel #870052 > select #2:267-300 828 atoms, 831 bonds, 102 residues, 3 models selected > select #2:287-300 330 atoms, 330 bonds, 42 residues, 3 models selected > color sel #870052 > select up 483 atoms, 489 bonds, 60 residues, 6 models selected > select up 10428 atoms, 10596 bonds, 1347 residues, 6 models selected > select up 20334 atoms, 20742 bonds, 2658 residues, 6 models selected > select #2:55-62 546 atoms, 552 bonds, 72 residues, 3 models selected > select #2:63-97 2517 atoms, 2544 bonds, 324 residues, 3 models selected > select #2:63-97 2517 atoms, 2544 bonds, 324 residues, 3 models selected > color sel #F59A00 > select up 3246 atoms, 3300 bonds, 417 residues, 12 models selected > select #2:195-244 2052 atoms, 2073 bonds, 258 residues, 3 models selected > select up 2178 atoms, 2205 bonds, 273 residues, 12 models selected > color sel #F59A00 > select > #1/F:30-33,38-48,51-60,176-181,185-194,243-244,286-289,296-305,309-318,321-322,333-336,340-344,349-352,358-361,364-367,373-375,395-398,404-407,411-415,422-426,430-434,439-443,449-452,455-458,466-469 1030 atoms, 1031 bonds, 133 residues, 1 model selected > select #2:245-286 1005 atoms, 1014 bonds, 126 residues, 3 models selected > color sel #54B986 > color sel #094334 > select #2:402-472 1578 atoms, 1596 bonds, 213 residues, 3 models selected > color sel #002C34 > color sel marine Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color sel navy blue Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color sel blue > color sel #002C34 > color sel #051650 > select #2:245-286 1005 atoms, 1014 bonds, 126 residues, 3 models selected > color sel #154406 > select #2:319-336, 395-401, 473-513 1554 atoms, 1575 bonds, 198 residues, 3 models selected > color sel #4F0433 > view matrix models #2.3,0,1,0,-101.29,0,0,1,150.37,1,0,0,10.066 > undo > select #2:245-286 1005 atoms, 1014 bonds, 126 residues, 3 models selected > Color sel #FFC66D Unknown command: Color sel #FFC66D > color sel #FFC66D > select #2:402-472 1578 atoms, 1596 bonds, 213 residues, 3 models selected > color sel #154406 > select #2:319-336, 395-401, 473-513 1554 atoms, 1575 bonds, 198 residues, 3 models selected > color sel #4DB5BC > select #2:26-44, 313-318, 380-394 1905 atoms, 1953 bonds, 234 residues, 3 models selected > select #2:26-44, 313-318, 380-394 1905 atoms, 1953 bonds, 234 residues, 3 models selected > color sel #B84145 > select #2:45-54, 301-312, 337-353, 359-378 1884 atoms, 1923 bonds, 240 residues, 3 models selected > color sel #FF876F > view matrix models #2.2,0,0,1,-26.888,1,0,0,107.51,0,1,0,-142.82 > undo > select #2:63-97, 195-244 4569 atoms, 4620 bonds, 582 residues, 3 models selected > color sel #4F0433 Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 88 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,7 Model Number: Z16S000NZKS/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 24 GB System Firmware Version: 10151.81.1 OS Loader Version: 10151.81.1 Software: System Software Overview: System Version: macOS 14.3 (23D56) Kernel Version: Darwin 23.3.0 Time since boot: 6 days, 20 hours, 44 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX