id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
14385	read_full_array: Permission denied	tim.passchier@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Unsure why the session will not reopen. I've had similar problems before

Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""C:\Users\DELL\Documents\Temp Uni of Leeds\ThesisDesktop\Figures\In
> Progress Chapter 5\localres.cxs"" format session

Opened relion_locres_filtered.mrc as #1, grid size 360,360,360, pixel 1.07,
shown at level 0.0576, step 1, values float32  
Opened relion_locres.mrc as #2, grid size 360,360,360, pixel 1.07, shown at
level 26.1, step 1, values float32  
Unable to restore session, resetting.  

Traceback (most recent call last):  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\session.py"", line 713, in restore  
obj = sm.restore_snapshot(self, data)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 406, in restore_snapshot  
c.set_vertex_colors()  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 230, in set_vertex_colors  
s.vertex_colors = self.vertex_colors(report_stats)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 200, in vertex_colors  
values, outside = self.volume_values()  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 267, in volume_values  
return self.offset_values(v, n, tf)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 275, in offset_values  
values, outside = self.vertex_values(v, xf)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 308, in vertex_values  
values, outside = v.interpolated_values(vertices, vertex_xform,  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map\volume.py"", line 1436, in interpolated_values  
matrix, p2m_transform = self.matrix_and_transform(point_xform,  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map\volume.py"", line 1621, in matrix_and_transform  
matrix = self.matrix(step=step, subregion=subregion)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map\volume.py"", line 1228, in matrix  
m = self.region_matrix(r, read_matrix)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map\volume.py"", line 1252, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\griddata.py"", line 302, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\mrc\mrc_grid.py"", line 44, in read_matrix  
return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\mrc\mrc_format.py"", line 284, in read_matrix  
matrix = read_array(self.path, self.data_offset,  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\readarray.py"", line 27, in read_array  
m = read_full_array(path, byte_offset, full_size,  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\readarray.py"", line 84, in read_full_array  
file.readinto(b)  
PermissionError: [Errno 13] Permission denied  

Log from Sun Dec 18 14:59:27 2022UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""C:\Users\DELL\Documents\Temp Uni of Leeds\EM\20200302 EM
> Processing\LocalRes\job513\relion_locres_filtered.mrc"" format mrc

Opened relion_locres_filtered.mrc as #1, grid size 360,360,360, pixel 1.07,
shown at level 0.0576, step 2, values float32  

> open ""C:\Users\DELL\Documents\Temp Uni of Leeds\EM\20200302 EM
> Processing\LocalRes\job513\relion_locres.mrc"" format mrc

Opened relion_locres.mrc as #2, grid size 360,360,360, pixel 1.07, shown at
level 26.1, step 2, values float32  

> volume #1 step 1

> volume #2 step 1

> set bgColor white

> lighting soft

> hide #!2 models

> ui tool show ""Surface Color""

> color sample #1.1 map #2 palette #ff0000:#ff7f7f:#ffffff:#7f7fff:#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> color sample #1.1 map #2 palette
> 3.409,#ff0000:3.763,#ffff00:4.116,#ffffff:4.469,#00ff00:4.822,#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> ui tool show ""Side View""

QWindowsWindow::setGeometry: Unable to set geometry 3840x2256+0+57 (frame:
3872x2344-16-15) on QWidgetWindow/""MainWindowClassWindow"" on ""\\\\.\DISPLAY1"".
Resulting geometry: 3840x2004+0+56 (frame: 3872x2092-16-16) margins: 16, 72,
16, 16 minimum size: 399x752 MINMAXINFO maxSize=0,0 maxpos=0,0
mintrack=1229,2344 maxtrack=0,0)  

> color sample #1.1 map #2 palette #ff0000:#ff7f7f:#ffffff:#7f7fff:#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> color sample #1.1 map #2 palette
> 3.4,#ff0000:3.75,#ff7f7f:4.1,#ffffff:4.5,#7f7fff:4.9,#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> color sample #1.1 map #2 palette
> 3.4,#ff0000:3.75,#ff7f7f:4.1,#ffffff:4.5,#7f7fff:4.9,#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> view orient

> key red:3.40 #ff7f7f:3.75 white:4.10 #7f7fff:4.50 blue:4.90

> ui tool show ""Color Key""

> ui mousemode left ""color key""

> key red:3.40 #ff7f7f:3.75 white:4.10 #7f7fff: blue:4.90

> key red:3.40 #ff7f7f: white:4.10 #7f7fff: blue:4.90

> key fontSize 23

> key fontSize 22

> key fontSize 21

> key fontSize 20

> key fontSize 19

> key fontSize 18

> key fontSize 17

> key fontSize 16

> key fontSize 15

> key fontSize 14

> key fontSize 13

> key fontSize 12

> key fontSize 11

> key fontSize 10

> key red:3.40 #ff7f7f: white:4.10 #7f7fff: blue:4.9

> key red:3.40 #ff7f7f: white:4.1 #7f7fff: blue:4.9

> key red:3.4 #ff7f7f: white:4.1 #7f7fff: blue:4.9

> key pos 0.725202,0.0476309

> key size 0.25000,0.04000

> key size 0.25000,0.03000

> ui mousemode left rotate

> save C:\Users\DELL\Desktop\image219.png supersample 3

> save ""C:/Users/DELL/Documents/Temp Uni of Leeds/ThesisDesktop/Figures/In
> Progress Chapter 5/localres.cxs""

\u2014\u2014\u2014 End of log from Sun Dec 18 14:59:27 2022 \u2014\u2014\u2014

opened ChimeraX session  

> open ""C:/Users/DELL/Documents/Temp Uni of Leeds/EM/PDB_Deposition/SciRep
> Files/postprocess_masked.mrc""

Opened postprocess_masked.mrc as #1, grid size 360,360,360, pixel 1.07, shown
at level 0.03, step 2, values float32  

> volume #1 step 1

> open ""C:/Users/DELL/Documents/Temp Uni of Leeds/ThesisDesktop/Figures/In
> Progress Chapter 5/localres.cxs""

Opened relion_locres_filtered.mrc as #1, grid size 360,360,360, pixel 1.07,
shown at level 0.0576, step 1, values float32  
Opened relion_locres.mrc as #2, grid size 360,360,360, pixel 1.07, shown at
level 26.1, step 1, values float32  
Unable to restore session, resetting.  

Traceback (most recent call last):  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\session.py"", line 713, in restore  
obj = sm.restore_snapshot(self, data)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 406, in restore_snapshot  
c.set_vertex_colors()  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 230, in set_vertex_colors  
s.vertex_colors = self.vertex_colors(report_stats)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 200, in vertex_colors  
values, outside = self.volume_values()  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 267, in volume_values  
return self.offset_values(v, n, tf)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 275, in offset_values  
values, outside = self.vertex_values(v, xf)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\surface\colorvol.py"", line 308, in vertex_values  
values, outside = v.interpolated_values(vertices, vertex_xform,  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map\volume.py"", line 1436, in interpolated_values  
matrix, p2m_transform = self.matrix_and_transform(point_xform,  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map\volume.py"", line 1621, in matrix_and_transform  
matrix = self.matrix(step=step, subregion=subregion)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map\volume.py"", line 1228, in matrix  
m = self.region_matrix(r, read_matrix)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map\volume.py"", line 1252, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\griddata.py"", line 302, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\mrc\mrc_grid.py"", line 44, in read_matrix  
return self.mrc_data.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\mrc\mrc_format.py"", line 284, in read_matrix  
matrix = read_array(self.path, self.data_offset,  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\readarray.py"", line 27, in read_array  
m = read_full_array(path, byte_offset, full_size,  
File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\map_data\readarray.py"", line 84, in read_full_array  
file.readinto(b)  
PermissionError: [Errno 13] Permission denied  

Log from Sun Dec 18 14:59:27 2022UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""C:\Users\DELL\Documents\Temp Uni of Leeds\EM\20200302 EM
> Processing\LocalRes\job513\relion_locres_filtered.mrc"" format mrc

Opened relion_locres_filtered.mrc as #1, grid size 360,360,360, pixel 1.07,
shown at level 0.0576, step 2, values float32  

> open ""C:\Users\DELL\Documents\Temp Uni of Leeds\EM\20200302 EM
> Processing\LocalRes\job513\relion_locres.mrc"" format mrc

Opened relion_locres.mrc as #2, grid size 360,360,360, pixel 1.07, shown at
level 26.1, step 2, values float32  

> volume #1 step 1

> volume #2 step 1

> set bgColor white

> lighting soft

> hide #!2 models

> ui tool show ""Surface Color""

> color sample #1.1 map #2 palette #ff0000:#ff7f7f:#ffffff:#7f7fff:#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> color sample #1.1 map #2 palette
> 3.409,#ff0000:3.763,#ffff00:4.116,#ffffff:4.469,#00ff00:4.822,#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> ui tool show ""Side View""

QWindowsWindow::setGeometry: Unable to set geometry 3840x2256+0+57 (frame:
3872x2344-16-15) on QWidgetWindow/""MainWindowClassWindow"" on ""\\\\.\DISPLAY1"".
Resulting geometry: 3840x2004+0+56 (frame: 3872x2092-16-16) margins: 16, 72,
16, 16 minimum size: 399x752 MINMAXINFO maxSize=0,0 maxpos=0,0
mintrack=1229,2344 maxtrack=0,0)  

> color sample #1.1 map #2 palette #ff0000:#ff7f7f:#ffffff:#7f7fff:#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> color sample #1.1 map #2 palette
> 3.4,#ff0000:3.75,#ff7f7f:4.1,#ffffff:4.5,#7f7fff:4.9,#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> color sample #1.1 map #2 palette
> 3.4,#ff0000:3.75,#ff7f7f:4.1,#ffffff:4.5,#7f7fff:4.9,#0000ff

Map values for surface ""surface"": minimum 3.409, mean 3.649, maximum 4.822  

> view orient

> key red:3.40 #ff7f7f:3.75 white:4.10 #7f7fff:4.50 blue:4.90

> ui tool show ""Color Key""

> ui mousemode left ""color key""

> key red:3.40 #ff7f7f:3.75 white:4.10 #7f7fff: blue:4.90

> key red:3.40 #ff7f7f: white:4.10 #7f7fff: blue:4.90

> key fontSize 23

> key fontSize 22

> key fontSize 21

> key fontSize 20

> key fontSize 19

> key fontSize 18

> key fontSize 17

> key fontSize 16

> key fontSize 15

> key fontSize 14

> key fontSize 13

> key fontSize 12

> key fontSize 11

> key fontSize 10

> key red:3.40 #ff7f7f: white:4.10 #7f7fff: blue:4.9

> key red:3.40 #ff7f7f: white:4.1 #7f7fff: blue:4.9

> key red:3.4 #ff7f7f: white:4.1 #7f7fff: blue:4.9

> key pos 0.725202,0.0476309

> key size 0.25000,0.04000

> key size 0.25000,0.03000

> ui mousemode left rotate

> save C:\Users\DELL\Desktop\image219.png supersample 3

> save ""C:/Users/DELL/Documents/Temp Uni of Leeds/ThesisDesktop/Figures/In
> Progress Chapter 5/localres.cxs""

\u2014\u2014\u2014 End of log from Sun Dec 18 14:59:27 2022 \u2014\u2014\u2014

opened ChimeraX session  




OpenGL version: 3.3.0 NVIDIA 532.09
OpenGL renderer: NVIDIA GeForce GTX 1650/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: XPS 15 7590
OS: Microsoft Windows 10 Home (Build 19045)
Memory: 16,893,698,048
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz
OSLanguage: en-US
Locale: ('en_GB', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
   alabaster: 0.7.12
   appdirs: 1.4.4
   Babel: 2.9.1
   backcall: 0.2.0
   blockdiag: 2.0.1
   certifi: 2020.12.5
   cftime: 1.5.0
   chardet: 3.0.4
   ChimeraX-AddCharge: 1.0.1
   ChimeraX-AddH: 2.1.6
   ChimeraX-AlignmentAlgorithms: 2.0
   ChimeraX-AlignmentHdrs: 3.2
   ChimeraX-AlignmentMatrices: 2.0
   ChimeraX-Alignments: 2.1
   ChimeraX-AmberInfo: 1.0
   ChimeraX-Arrays: 1.0
   ChimeraX-Atomic: 1.13.2
   ChimeraX-AtomicLibrary: 3.1.3
   ChimeraX-AtomSearch: 2.0
   ChimeraX-AtomSearchLibrary: 1.0
   ChimeraX-AxesPlanes: 2.0
   ChimeraX-BasicActions: 1.1
   ChimeraX-BILD: 1.0
   ChimeraX-BlastProtein: 1.1
   ChimeraX-BondRot: 2.0
   ChimeraX-BugReporter: 1.0
   ChimeraX-BuildStructure: 2.5.2
   ChimeraX-Bumps: 1.0
   ChimeraX-BundleBuilder: 1.1
   ChimeraX-ButtonPanel: 1.0
   ChimeraX-CageBuilder: 1.0
   ChimeraX-CellPack: 1.0
   ChimeraX-Centroids: 1.1
   ChimeraX-ChemGroup: 2.0
   ChimeraX-Clashes: 2.1
   ChimeraX-Clipper: 0.16.0
   ChimeraX-ColorActions: 1.0
   ChimeraX-ColorGlobe: 1.0
   ChimeraX-ColorKey: 1.2.1
   ChimeraX-CommandLine: 1.1.4
   ChimeraX-ConnectStructure: 2.0
   ChimeraX-Contacts: 1.0
   ChimeraX-Core: 1.2.5
   ChimeraX-CoreFormats: 1.0
   ChimeraX-coulombic: 1.1.1
   ChimeraX-Crosslinks: 1.0
   ChimeraX-Crystal: 1.0
   ChimeraX-CrystalContacts: 1.0
   ChimeraX-DataFormats: 1.1
   ChimeraX-Dicom: 1.0
   ChimeraX-DistMonitor: 1.1.3
   ChimeraX-DistUI: 1.0
   ChimeraX-Dssp: 2.0
   ChimeraX-EMDB-SFF: 1.0
   ChimeraX-ExperimentalCommands: 1.0
   ChimeraX-FileHistory: 1.0
   ChimeraX-FunctionKey: 1.0
   ChimeraX-Geometry: 1.1
   ChimeraX-gltf: 1.0
   ChimeraX-Graphics: 1.0
   ChimeraX-Hbonds: 2.1
   ChimeraX-Help: 1.1
   ChimeraX-HKCage: 1.3
   ChimeraX-IHM: 1.0
   ChimeraX-ImageFormats: 1.1
   ChimeraX-IMOD: 1.0
   ChimeraX-IO: 1.0.1
   ChimeraX-Label: 1.0
   ChimeraX-ListInfo: 1.1.1
   ChimeraX-Log: 1.1.2
   ChimeraX-LookingGlass: 1.1
   ChimeraX-Maestro: 1.8.1
   ChimeraX-Map: 1.0.2
   ChimeraX-MapData: 2.0
   ChimeraX-MapEraser: 1.0
   ChimeraX-MapFilter: 2.0
   ChimeraX-MapFit: 2.0
   ChimeraX-MapSeries: 2.0
   ChimeraX-Markers: 1.0
   ChimeraX-Mask: 1.0
   ChimeraX-MatchMaker: 1.2.1
   ChimeraX-MDcrds: 2.2
   ChimeraX-MedicalToolbar: 1.0.1
   ChimeraX-Meeting: 1.0
   ChimeraX-MLP: 1.1
   ChimeraX-mmCIF: 2.3
   ChimeraX-MMTF: 2.1
   ChimeraX-Modeller: 1.0.1
   ChimeraX-ModelPanel: 1.0.1
   ChimeraX-ModelSeries: 1.0
   ChimeraX-Mol2: 2.0
   ChimeraX-Morph: 1.0
   ChimeraX-MouseModes: 1.1
   ChimeraX-Movie: 1.0
   ChimeraX-Neuron: 1.0
   ChimeraX-Nucleotides: 2.0.1
   ChimeraX-OpenCommand: 1.5
   ChimeraX-PDB: 2.4.1
   ChimeraX-PDBBio: 1.0
   ChimeraX-PDBLibrary: 1.0.1
   ChimeraX-PDBMatrices: 1.0
   ChimeraX-PickBlobs: 1.0
   ChimeraX-Positions: 1.0
   ChimeraX-PresetMgr: 1.0.1
   ChimeraX-PubChem: 2.0.1
   ChimeraX-ReadPbonds: 1.0
   ChimeraX-Registration: 1.1
   ChimeraX-RemoteControl: 1.0
   ChimeraX-ResidueFit: 1.0
   ChimeraX-RestServer: 1.1
   ChimeraX-RNALayout: 1.0
   ChimeraX-RotamerLibMgr: 2.0
   ChimeraX-RotamerLibsDunbrack: 2.0
   ChimeraX-RotamerLibsDynameomics: 2.0
   ChimeraX-RotamerLibsRichardson: 2.0
   ChimeraX-SaveCommand: 1.4
   ChimeraX-SchemeMgr: 1.0
   ChimeraX-SDF: 2.0
   ChimeraX-Segger: 1.0
   ChimeraX-Segment: 1.0
   ChimeraX-SeqView: 2.3
   ChimeraX-Shape: 1.0.1
   ChimeraX-Shell: 1.0
   ChimeraX-Shortcuts: 1.0
   ChimeraX-ShowAttr: 1.0
   ChimeraX-ShowSequences: 1.0
   ChimeraX-SideView: 1.0
   ChimeraX-Smiles: 2.0.1
   ChimeraX-SmoothLines: 1.0
   ChimeraX-SpaceNavigator: 1.0
   ChimeraX-StdCommands: 1.3.1
   ChimeraX-STL: 1.0
   ChimeraX-Storm: 1.0
   ChimeraX-Struts: 1.0
   ChimeraX-Surface: 1.0
   ChimeraX-SwapAA: 2.0
   ChimeraX-SwapRes: 2.1
   ChimeraX-TapeMeasure: 1.0
   ChimeraX-Test: 1.0
   ChimeraX-Toolbar: 1.0.1
   ChimeraX-ToolshedUtils: 1.2
   ChimeraX-Tug: 1.0
   ChimeraX-UI: 1.7.6
   ChimeraX-uniprot: 2.1
   ChimeraX-UnitCell: 1.0
   ChimeraX-ViewDockX: 1.0
   ChimeraX-Vive: 1.1
   ChimeraX-VolumeMenu: 1.0
   ChimeraX-VTK: 1.0
   ChimeraX-WavefrontOBJ: 1.0
   ChimeraX-WebCam: 1.0
   ChimeraX-WebServices: 1.0
   ChimeraX-Zone: 1.0
   colorama: 0.4.3
   comtypes: 1.1.7
   cxservices: 1.0
   cycler: 0.10.0
   Cython: 0.29.21
   decorator: 5.0.9
   distlib: 0.3.1
   docutils: 0.16
   filelock: 3.0.12
   funcparserlib: 0.3.6
   grako: 3.16.5
   h5py: 2.10.0
   html2text: 2020.1.16
   idna: 2.10
   ihm: 0.17
   imagecodecs: 2020.5.30
   imagesize: 1.2.0
   ipykernel: 5.3.4
   ipython: 7.18.1
   ipython-genutils: 0.2.0
   jedi: 0.17.2
   Jinja2: 2.11.2
   jupyter-client: 6.1.7
   jupyter-core: 4.7.1
   kiwisolver: 1.3.1
   line-profiler: 2.1.2
   lxml: 4.6.2
   lz4: 3.1.0
   MarkupSafe: 2.0.1
   matplotlib: 3.3.2
   msgpack: 1.0.0
   netCDF4: 1.5.4
   networkx: 2.5
   numexpr: 2.7.3
   numpy: 1.19.2
   numpydoc: 1.1.0
   openvr: 1.14.1501
   packaging: 20.9
   ParmEd: 3.2.0
   parso: 0.7.1
   pickleshare: 0.7.5
   Pillow: 7.2.0
   pip: 21.0.1
   pkginfo: 1.5.0.1
   prompt-toolkit: 3.0.18
   psutil: 5.7.2
   pycollada: 0.7.1
   pydicom: 2.0.0
   Pygments: 2.7.1
   PyOpenGL: 3.1.5
   PyOpenGL-accelerate: 3.1.5
   pyparsing: 2.4.7
   PyQt5-commercial: 5.15.2
   PyQt5-sip: 12.8.1
   PyQtWebEngine-commercial: 5.15.2
   python-dateutil: 2.8.1
   pytz: 2021.1
   pywin32: 228
   pyzmq: 22.0.3
   qtconsole: 4.7.7
   QtPy: 1.9.0
   RandomWords: 0.3.0
   requests: 2.24.0
   scipy: 1.5.2
   setuptools: 50.3.2
   sfftk-rw: 0.6.7.dev1
   six: 1.15.0
   snowballstemmer: 2.1.0
   sortedcontainers: 2.2.2
   Sphinx: 3.2.1
   sphinxcontrib-applehelp: 1.0.2
   sphinxcontrib-blockdiag: 2.0.0
   sphinxcontrib-devhelp: 1.0.2
   sphinxcontrib-htmlhelp: 2.0.0
   sphinxcontrib-jsmath: 1.0.1
   sphinxcontrib-qthelp: 1.0.3
   sphinxcontrib-serializinghtml: 1.1.5
   suds-jurko: 0.6
   tables: 3.6.1
   tifffile: 2020.9.3
   tinyarray: 1.2.3
   tornado: 6.1
   traitlets: 5.0.5
   urllib3: 1.25.11
   wcwidth: 0.2.5
   webcolors: 1.11.1
   wheel: 0.36.0
   wheel-filename: 1.3.0
   WMI: 1.5.1


}}}
"	defect	closed	normal		Volume Data		nonchimerax						all	ChimeraX