id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1256 Module can't find shared lib Elaine Meng Conrad Huang "{{{ The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.8 (2018-08-15) Description Command ""hbonds"" gives error on any structure. Log: UCSF ChimeraX version: 0.8 (2018-08-15) How to cite UCSF ChimeraX open 1zik 1zik title: GCN4-leucine zipper core mutant ASN16LYS in the dimeric state [more info...;] Chain information for 1zik #1 --- Chain | Description A B | general control protein GCN4 hbonds reveal true Traceback (most recent call last):   File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 205, in execute     cmd.run(cmd_text)   File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/commands/cli.py"", line 2561, in run     result = ci.function(session, **kw_args)   File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/atomic/hbonds/cmd.py"", line 83, in cmd_hbonds     result = hb_func(session, struct_info, dist_slop=dist_slop, angle_slop=angle_slop, **base_kw)   File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/atomic/hbonds/hbond.py"", line 465, in find_hbonds     from chimerax.atomic.search import AtomSearchTree   File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/atomic/search/__init__.py"", line 14, in     from .ast import AtomSearchTree ImportError: dlopen(/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/atomic/search/ast.cpython-36m-darwin.so, 2): Library not loaded: @loader_path/libatom_search.dylib   Referenced from: /Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/atomic/search/ast.cpython-36m-darwin.so   Reason: image not found ImportError: dlopen(/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/atomic/search/ast.cpython-36m-darwin.so, 2): Library not loaded: @loader_path/libatom_search.dylib Referenced from: /Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/atomic/search/ast.cpython-36m-darwin.so Reason: image not found File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/atomic/search/__init__.py"", line 14, in from .ast import AtomSearchTree See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102 OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Build System fixed lpravda@… all ChimeraX