id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1099 PyPI dependency fail on 'make app-install' Tristan Croll Conrad "Pulls successfully from the repo in Linux, but on the Mac: {{{ Tristans-MacBook-Air:clipper tic20$ make app-install /Applications/ChimeraX.app/Contents/bin/ChimeraX --nogui --cmd ""devel install . ; exit"" 0.00% done: Initializing core 50.00% done: Initializing bundles Executing: devel install . running build running build_py running build_ext running test Searching for Clipper-Python>=0.1.1 Reading https://pypi.python.org/simple/Clipper-Python/ Download error on https://pypi.python.org/simple/Clipper-Python/: [SSL: TLSV1_ALERT_PROTOCOL_VERSION] tlsv1 alert protocol version (_ssl.c:777) -- Some packages may not be found! Couldn't find index page for 'Clipper-Python' (maybe misspelled?) Scanning index of all packages (this may take a while) Reading https://pypi.python.org/simple/ Download error on https://pypi.python.org/simple/: [SSL: TLSV1_ALERT_PROTOCOL_VERSION] tlsv1 alert protocol version (_ssl.c:777) -- Some packages may not be found! No local packages or working download links found for Clipper-Python>=0.1.1 Traceback (most recent call last): File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/core.py"", line 148, in setup dist.run_commands() File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/dist.py"", line 955, in run_commands self.run_command(cmd) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/dist.py"", line 974, in run_command cmd_obj.run() File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/setuptools/command/test.py"", line 214, in run installed_dists = self.install_dists(self.distribution) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/setuptools/command/test.py"", line 205, in install_dists ir_d = dist.fetch_build_eggs(dist.install_requires) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/setuptools/dist.py"", line 480, in fetch_build_eggs replace_conflicting=True, File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/pkg_resources/__init__.py"", line 881, in resolve replace_conflicting=replace_conflicting File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/pkg_resources/__init__.py"", line 1164, in best_match return self.obtain(req, installer) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/pkg_resources/__init__.py"", line 1176, in obtain return installer(requirement) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/setuptools/dist.py"", line 547, in fetch_build_egg return cmd.easy_install(req) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/setuptools/command/easy_install.py"", line 667, in easy_install raise DistutilsError(msg) distutils.errors.DistutilsError: Could not find suitable distribution for Requirement.parse('Clipper-Python>=0.1.1') During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 347, in _run_setup setuptools.setup(**kw) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/setuptools/__init__.py"", line 129, in setup return distutils.core.setup(**attrs) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/core.py"", line 163, in setup raise SystemExit(""error: "" + str(msg)) SystemExit: error: Could not find suitable distribution for Requirement.parse('Clipper-Python>=0.1.1') Traceback (most recent call last): File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/devel.py"", line 151, in _run unbound_method(bb, *args, **kw) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 15, in hack return _func(*args, **kw) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 63, in make_install self.make_wheel(test=test, debug=debug) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 15, in hack return _func(*args, **kw) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/bundle_builder/bundle_builder.py"", line 57, in make_wheel raise RuntimeError(""Building wheel failed"") RuntimeError: Building wheel failed Executing: exit Exiting ... }}} But if I install via `ChimeraX -m pip install Clipper-Python`: {{{ Tristans-MacBook-Air:clipper tic20$ ChimeraX -m pip install Clipper-Python Collecting Clipper-Python Downloading https://files.pythonhosted.org/packages/59/95/78fa7a84722f5429662c1dae31305af5fbf4e120f180d458a8622bbc8411/Clipper_Python-0.1.1-cp36-cp36m-macosx_10_6_intel.whl (34.6MB) 100% |████████████████████████████████| 35.0MB 36kB/s Requirement already satisfied: numpy>=1.14.0 in /Applications/ChimeraX.app/Contents/lib/python3.6/site-packages (from Clipper-Python) Installing collected packages: Clipper-Python Successfully installed Clipper-Python-0.1.1 You are using pip version 9.0.3, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. Lock 4471280752 acquired on /Users/tic20/Library/Caches/ChimeraX/0.6/toolshed/bundle_info.cache.lock Lock 4471280752 released on /Users/tic20/Library/Caches/ChimeraX/0.6/toolshed/bundle_info.cache.lock Tristans-MacBook-Air:clipper tic20$ }}} ... and everything works fine from that point on." defect closed moderate Tool Shed fixed all ChimeraX