id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 10165 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.5-arm64-arm-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000001ecaca080 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-11-16 15:07:08.00 +0800"",""app_version"":""1.6.1"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.5 (22G74)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""3C0970B7-161A-4E9B-AC8E-7B8B01472E1D""} { ""uptime"" : 150000, ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro17,1"", ""coalitionID"" : 22214, ""osVersion"" : { ""train"" : ""macOS 13.5"", ""build"" : ""22G74"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-11-16 15:06:47.2572 +0800"", ""incident"" : ""3C0970B7-161A-4E9B-AC8E-7B8B01472E1D"", ""pid"" : 61205, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2023-11-16 13:40:46.1043 +0800"", ""procStartAbsTime"" : 3808837159308, ""procExitAbsTime"" : 3829293291073, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""625613FD-F93A-5F3F-93B7-876932719AB7"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""189119B5-EF18-835F-661A-27B4F5EE4E7F"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 5, ""sleepWakeUUID"" : ""694ED8A0-164B-4E37-B79D-DBFB4DEFCC16"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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unallocated=2.3G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 4800K 8 \nCG image 736K 35 \nColorSync 592K 30 \nCoreAnimation 256K 16 \nCoreGraphics 64K 4 \nCoreServices 624K 2 \nCoreUI image data 4512K 31 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 699.7M 189 \nMALLOC guard page 192K 10 \nMALLOC_MEDIUM (reserved) 840.0M 8 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.6M 38 \nStack 162.4M 38 \nVM_ALLOCATE 200.6M 375 \nVM_ALLOCATE (reserved) 160.0M 3 reserved VM address space (unallocated)\n__AUTH 1844K 369 \n__AUTH_CONST 28.7M 601 \n__CTF 824 1 \n__DATA 20.0M 739 \n__DATA_CONST 38.8M 750 \n__DATA_DIRTY 1973K 229 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 830.7M 147 \n__OBJC_RO 66.4M 1 \n__OBJC_RW 2012K 1 \n__TEXT 848.7M 769 \ndyld private memory 272K 2 \nmapped file 558.4M 94 \nshared memory 3184K 27 \n=========== ======= ======= \nTOTAL 4.7G 4533 \nTOTAL, minus reserved VM space 3.5G 4533 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""5760ceea7d02f39ed57f672831c579b744a82254"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""62fe74515312cd4599bd3c80"", ""factorPackIds"" : { ""MYRIAD_BOOSTS"" : ""62fe74805312cd4599bd3c81"" }, ""deploymentId"" : 240000006 }, { ""rolloutId"" : ""6391cacc75b0720ff1f8c695"", ""factorPackIds"" : { ""COREOS_ICD"" : ""63957f508061fa721c8edc4a"" }, ""deploymentId"" : 240000007 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/bijie/Desktop/TfR1/data/cryo-EM/氨基酸序号正确结构PDB/dimer- > coot-0_real_space_refined_002-md_real_space_refined_010_renumber(1).pdb Summary of feedback from opening /Users/bijie/Desktop/TfR1/data/cryo- EM/氨基酸序号正确结构PDB/dimer- coot-0_real_space_refined_002-md_real_space_refined_010_renumber(1).pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 TRP A 42 SER A 55 1 14 Start residue of secondary structure not found: HELIX 2 2 PHE A 58 ASN A 66 1 9 Start residue of secondary structure not found: HELIX 3 3 GLN A 78 GLU A 93 1 16 Start residue of secondary structure not found: HELIX 4 4 LYS A 158 ASP A 163 1 6 Start residue of secondary structure not found: HELIX 5 5 PHE A 182 SER A 191 1 10 2 messages similar to the above omitted End residue of secondary structure not found: HELIX 8 8 SER A 273 TRP A 275 1 3 Start residue of secondary structure not found: HELIX 9 9 ALA A 334 LEU A 356 1 23 Start residue of secondary structure not found: HELIX 10 10 VAL A 379 GLY A 387 1 9 Start residue of secondary structure not found: HELIX 11 11 LEU A 389 LEU A 392 1 4 Start residue of secondary structure not found: HELIX 12 12 PRO A 418 MET A 428 1 11 Start residue of secondary structure not found: HELIX 13 13 ALA A 447 LYS A 449 1 3 2 messages similar to the above omitted End residue of secondary structure not found: HELIX 16 16 LEU A 501 HIS A 521 1 21 Start residue of secondary structure not found: HELIX 17 17 TYR A 529 GLU A 552 1 24 Start residue of secondary structure not found: HELIX 18 18 GLN A 558 ASN A 580 1 23 Start residue of secondary structure not found: HELIX 19 19 ARG A 586 MET A 597 1 12 Start residue of secondary structure not found: HELIX 20 20 VAL A 599 PHE A 603 1 5 Start residue of secondary structure not found: HELIX 21 21 LEU A 627 GLN A 639 1 13 15 messages similar to the above omitted End residue of secondary structure not found: HELIX 37 37 SER B 273 TRP B 275 1 3 Start residue of secondary structure not found: HELIX 38 38 ALA B 334 LEU B 356 1 23 Start residue of secondary structure not found: HELIX 39 39 VAL B 379 GLY B 387 1 9 Start residue of secondary structure not found: HELIX 40 40 LEU B 389 LEU B 392 1 4 Start residue of secondary structure not found: HELIX 41 41 PRO B 418 ASN B 430 1 13 Start residue of secondary structure not found: HELIX 42 42 ALA B 447 LYS B 449 1 3 2 messages similar to the above omitted End residue of secondary structure not found: HELIX 45 45 LEU B 501 HIS B 521 1 21 Start residue of secondary structure not found: HELIX 46 46 TYR B 529 GLU B 552 1 24 Start residue of secondary structure not found: HELIX 47 47 GLN B 558 ASN B 580 1 23 Start residue of secondary structure not found: HELIX 48 48 ARG B 586 PHE B 603 1 18 Start residue of secondary structure not found: HELIX 49 49 LEU B 627 GLN B 639 1 13 Start residue of secondary structure not found: HELIX 50 50 ASN B 641 ALA B 643 1 3 54 messages similar to the above omitted Cannot find LINK/SSBOND residue CYS (271 ) Cannot find LINK/SSBOND residue CYS (28 ) Cannot find LINK/SSBOND residue CYS (271 ) Cannot find LINK/SSBOND residue CYS (28 ) Chain information for dimer- coot-0_real_space_refined_002-md_real_space_refined_010_renumber(1).pdb #1 --- Chain | Description A B | No description available a b | No description available > set bgColor white > select /a 878 atoms, 893 bonds, 117 residues, 1 model selected > color sel light sea green > color sel forest green > ui mousemode right select > select /A:721 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:722 8 atoms, 7 bonds, 1 residue, 1 model selected > show sel atoms > select /A:245 8 atoms, 7 bonds, 1 residue, 1 model selected > select /A:244 9 atoms, 8 bonds, 1 residue, 1 model selected Drag select of 2 residues > show sel atoms > select /A:243 11 atoms, 11 bonds, 1 residue, 1 model selected > show sel atoms > select clear > select /A:241 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:272 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:240 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms Drag select of 6 residues > select clear > select /A:247 12 atoms, 12 bonds, 1 residue, 1 model selected > select /A:248 7 atoms, 6 bonds, 1 residue, 1 model selected > show sel atoms > select clear > select /A:250 7 atoms, 6 bonds, 1 residue, 1 model selected > show sel atoms > select /A:369 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms Drag select of 1 residues > select clear > ui mousemode right translate > ui mousemode right select > select /a:105 11 atoms, 10 bonds, 1 residue, 1 model selected Drag select of 2 residues > select /a:104 12 atoms, 12 bonds, 1 residue, 1 model selected > select /a:105 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > select /a:106 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > select /a:102 8 atoms, 7 bonds, 1 residue, 1 model selected > show sel atoms > select /a:100 4 atoms, 3 bonds, 1 residue, 1 model selected > show sel atoms > select /a:105 11 atoms, 10 bonds, 1 residue, 1 model selected > select /a:28 7 atoms, 6 bonds, 1 residue, 1 model selected > select /a:29 11 atoms, 11 bonds, 1 residue, 1 model selected > select /a:33 7 atoms, 6 bonds, 1 residue, 1 model selected > show sel atoms > select /a:65 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > hide sel cartoons > show sel cartoons > select /a 878 atoms, 893 bonds, 117 residues, 1 model selected > hide sel cartoons > select /A 5056 atoms, 5176 bonds, 639 residues, 1 model selected > hide sel cartoons > select clear Drag select of 116 atoms, 106 bonds > color sel byhetero > select clear Drag select of 116 atoms, 106 bonds > hbonds sel reveal true 21 hydrogen bonds found > hbonds sel reveal true 21 hydrogen bonds found > select clear Drag select of 79 atoms, 68 bonds, 11 pseudobonds Drag select of 166 atoms, 153 bonds, 21 pseudobonds > select clear Drag select of 167 atoms, 153 bonds, 21 pseudobonds > label (#!1 & sel) attribute name > label (#!1 & sel) text ""{0.name} {0.number}{0.insertion_code}"" > select clear > view clip false > select clear Drag select of 159 atoms, 146 bonds, 20 pseudobonds > ui windowfill toggle > ui mousemode right translate > ui mousemode right select > select clear Drag select of 3 atoms, 2 bonds Drag select of 6 atoms, 5 bonds > select clear Drag select of 4 atoms, 4 bonds > select clear Drag select of 6 atoms, 5 bonds > save /Users/bijie/Desktop/interface.cxs Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Model Number: Z11F000BPCH/A Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 8422.141.2 OS Loader Version: 8422.141.2 Software: System Software Overview: System Version: macOS 13.5 (22G74) Kernel Version: Darwin 22.6.0 Time since boot: 6天19小时39分钟 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal U27U2G6R4B: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate Tom Goddard all ChimeraX