0.00% done: Initializing core
Toolshed: __init__ False False None
Toolshed: cache dir: C:\Users\tic20\AppData\Local\UCSF\ChimeraX\Cache\0.91\toolshed
Toolshed: site dir: C:\Users\tic20\AppData\Local\UCSF\ChimeraX\0.91\site-packages
Toolshed: loading bundles
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev7
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev7
Toolshed: build available bundle ChimeraX_Clipper 0.9.11
Toolshed: build available bundle ChimeraX_Clipper 0.9.11
Toolshed: build available bundle ChimeraX_Maestro 1.5
Toolshed: build available bundle ChimeraX_Maestro 1.4
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev6
Toolshed: build available bundle ChimeraX_Clipper 0.9.10
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev6
Toolshed: build available bundle ChimeraX_Clipper 0.9.10
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev6
Toolshed: build available bundle ChimeraX_Clipper 0.9.10
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev5
Toolshed: build available bundle ChimeraX_Clipper 0.9.9
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev5
Toolshed: build available bundle ChimeraX_Clipper 0.9.9
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev5
Toolshed: build available bundle ChimeraX_Clipper 0.9.9
Toolshed: build available bundle ChimeraX_Maestro 1.3
Toolshed: build available bundle ChimeraX_Maestro 1.2
Toolshed: build available bundle ChimeraX_Maestro 1.1
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev4
Toolshed: build available bundle ChimeraX_Clipper 0.9.8
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev4
Toolshed: build available bundle ChimeraX_Clipper 0.9.8
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev4
Toolshed: build available bundle ChimeraX_Clipper 0.9.8
Toolshed: build available bundle ChimeraX_Maestro 1.0
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev3
Toolshed: build available bundle ChimeraX_Clipper 0.9.7
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev3
Toolshed: build available bundle ChimeraX_Clipper 0.9.7
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev3
Toolshed: build available bundle ChimeraX_Clipper 0.9.7
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev2
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev2
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev2
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev1
Toolshed: build available bundle ChimeraX_Clipper 0.9.6
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev1
Toolshed: build available bundle ChimeraX_Clipper 0.9.6
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev1
Toolshed: build available bundle ChimeraX_Clipper 0.9.6
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev0
Toolshed: build available bundle ChimeraX_Clipper 0.9.5
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev0
Toolshed: build available bundle ChimeraX_Clipper 0.9.5
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3.dev0
Toolshed: build available bundle ChimeraX_Clipper 0.9.5
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3
Toolshed: build available bundle ChimeraX_Clipper 0.9.4
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3
Toolshed: build available bundle ChimeraX_Clipper 0.9.4
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b3
Toolshed: build available bundle ChimeraX_Clipper 0.9.4
Toolshed: build available bundle ChimeraX_Clipper 0.9.3
Toolshed: build available bundle ChimeraX_Clipper 0.9.3
Toolshed: build available bundle ChimeraX_Clipper 0.9.2
Toolshed: build available bundle ChimeraX_Clipper 0.9.2
Toolshed: build available bundle ChimeraX_Clipper 0.9.1
Toolshed: build available bundle ChimeraX_Clipper 0.9.1
Toolshed: build available bundle ChimeraX_Clipper 0.9.1
Toolshed: build available bundle ChimeraX_Clipper 0.9
Toolshed: build available bundle ChimeraX_Clipper 0.9
Toolshed: build available bundle ChimeraX_Clipper 0.9
Toolshed: build available bundle MolecularDynamicsViewer 1.1
Toolshed: build available bundle MolecularDynamicsViewer 1.0
Toolshed: build available bundle ChimeraX_Clipper 0.4.0
Toolshed: build available bundle ChimeraX_Clipper 0.3.1
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b2
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b2
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b2
Toolshed: build available bundle ChimeraX_Clipper 0.3
Toolshed: build available bundle ChimeraX_Clipper 0.3
Toolshed: build available bundle ChimeraX_Clipper 0.3
Toolshed: build available bundle ChimeraX_Clipper 0.2.1
Toolshed: build available bundle ChimeraX_Clipper 0.2.1
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b1
Toolshed: build available bundle ChimeraX_Clipper 0.2.0
Toolshed: build available bundle ChimeraX_ISOLDE 1.0b1
Toolshed: build available bundle ChimeraX_Clipper 0.2.0
Toolshed: build available bundle ChimeraX_Tempy 0.6.0
Toolshed: build available bundle ChimeraX_Tempy 0.5.0
Toolshed: build available bundle ChimeraX_Tempy 0.4.0
Toolshed: build available bundle ChimeraX_Tempy 0.3.0
Toolshed: build available bundle ChimeraX_SignalViewer 1.0
Toolshed: build available bundle ChimeraX_Tempy 0.2.0
Toolshed: build available bundle ChimeraX_Tempy 0.1.0
Toolshed: build available bundle ChimeraX_Tempy 0.0.5
Toolshed: build available bundle ChimeraX_Tempy 0.0.4
Toolshed: build available bundle ChimeraX_Tempy 0.0.3
Toolshed: build available bundle ChimeraX_Tempy 0.0.2
Toolshed: build available bundle ChimeraX_Tempy 0.0.1
Toolshed: build available bundle ChimeraX_Stringdb 0.1
Toolshed: build available bundle ChimeraX_Cytoscape 0.1
Toolshed: build available bundle ChimeraX_BlastProtein 0.1
Toolshed: reload False False
Toolshed: _bundle_cache False
Toolshed: InstalledBundleCache.load: rebuild_cache False
Toolshed: InstalledBundleCache._read_cache: C:\Users\tic20\AppData\Local\UCSF\ChimeraX\Cache\0.91\toolshed\bundle_info.cache
Toolshed: _is_cache_newer
Toolshed: InstalledBundleCache._read_cache: 107 bundles
Toolshed: InstalledBundleCache.load: using cached data
Toolshed: register bundle ChimeraX-Core 0.91
Toolshed: register bundle ChimeraX-Vive 1.0
Toolshed: delay_registration vr
Toolshed: delay_registration device vr
Toolshed: register bundle ChimeraX-CellPack 1.0
Toolshed: register_file_type cellpack
Toolshed: register bundle ChimeraX-Preset-Mgr 1.0
Toolshed: delay_registration preset
Toolshed: register bundle ChimeraX-Meeting 1.0
Toolshed: delay_registration meeting
Toolshed: register bundle ChimeraX-WavefrontOBJ 1.0
Toolshed: register_file_type Wavefront OBJ
Toolshed: register bundle ChimeraX-RotamerLibs-Dynameomics 1.0
Toolshed: register bundle ChimeraX-Morph 1.0
Toolshed: delay_registration morph
Toolshed: register bundle ChimeraX-RestServer 0.1
Toolshed: delay_registration remotecontrol rest
Toolshed: register bundle ChimeraX-Storm 1.0
Toolshed: register_file_type STORM
Toolshed: register bundle ChimeraX-Texture 1.0
Toolshed: delay_registration texture
Toolshed: register bundle ChimeraX-Movie 1.0
Toolshed: delay_registration movie
Toolshed: register bundle ChimeraX-RealSense 1.0
Toolshed: delay_registration device realsense
Toolshed: register bundle ChimeraX-RotamerLibs-Dunbrack 1.0
Toolshed: register bundle ChimeraX-ExperimentalCommands 1.0
Toolshed: delay_registration ribbon
Toolshed: delay_registration ribbon hide
Toolshed: delay_registration ~ribbon
Toolshed: delay_registration getcrd
Toolshed: delay_registration debug dumpspec
Toolshed: register bundle ChimeraX-SpaceNavigator 1.0
Toolshed: delay_registration device snav
Toolshed: register bundle ChimeraX-gltf 1.0
Toolshed: register_file_type glTF
Toolshed: register bundle ChimeraX-Atomic 1.0
Toolshed: register bundle ChimeraX-VTK 1.0
Toolshed: register_file_type VTK PolyData
Toolshed: register bundle ChimeraX-WebServices 1.0
Toolshed: register bundle ChimeraX-RotamerLibs-Richardson 1.0
Toolshed: register bundle ChimeraX-STL 1.0
Toolshed: register_file_type StereoLithography
Toolshed: register bundle ChimeraX-MouseModes 1.0
Toolshed: delay_registration ui mousemode
Toolshed: delay_registration mousemode
Toolshed: register bundle ChimeraX-Segment 1.0
Toolshed: register bundle ChimeraX-MLP 1.0
Toolshed: delay_registration mlp
Toolshed: register bundle ChimeraX-Rotamer-Lib-Mgr 1.0
Toolshed: register bundle ChimeraX-Test 1.0
Toolshed: delay_registration debug test
Toolshed: delay_registration debug exectest
Toolshed: delay_registration debug expectfail
Toolshed: register bundle ChimeraX-Crystal 1.0
Toolshed: register bundle ChimeraX-Dicom 1.0
Toolshed: register bundle ChimeraX-Scheme-Mgr 1.0
Toolshed: register bundle ChimeraX-List-Info 0.1
Toolshed: delay_registration info
Toolshed: register bundle ChimeraX-SmoothLines 1.0
Toolshed: delay_registration smoothlines
Toolshed: register bundle ChimeraX-RemoteControl 1.0
Toolshed: delay_registration remotecontrol xmlrpc
Toolshed: register bundle ChimeraX-Struts 1.0
Toolshed: delay_registration struts
Toolshed: register bundle ChimeraX-ColorGlobe 1.0
Toolshed: register_file_type Directional FSC
Toolshed: register bundle ChimeraX-MapData 1.0
Toolshed: register bundle ChimeraX-Dssp 1.0
Toolshed: register bundle ChimeraX-ChemGroup 1.0
Toolshed: register bundle ChimeraX-PDB 1.0
Toolshed: register_file_type PDB
Toolshed: register bundle ChimeraX-MD-crds 1.0
Toolshed: register_file_type Gromacs full-precision coordinates
Toolshed: register_file_type Gromacs compressed coordinates
Toolshed: register_file_type DCD coordinates
Toolshed: register bundle ChimeraX-Atom-Search 1.0
Toolshed: register bundle ChimeraX-UI 1.0
Toolshed: delay_registration ui
Toolshed: register bundle ChimeraX-Clipper 0.9.11
Toolshed: delay_registration clipper
Toolshed: delay_registration cview
Toolshed: register_file_type Structure factor MTZ
Toolshed: register bundle ChimeraX-Std-Commands 1.0
Toolshed: delay_registration alias
Toolshed: delay_registration alias list
Toolshed: delay_registration alias delete
Toolshed: delay_registration ~alias
Toolshed: delay_registration align
Toolshed: delay_registration camera
Toolshed: delay_registration cartoon
Toolshed: delay_registration ~cartoon
Toolshed: delay_registration cd
Toolshed: delay_registration clip
Toolshed: delay_registration ~clip
Toolshed: delay_registration close
Toolshed: delay_registration cofr
Toolshed: delay_registration ~cofr
Toolshed: delay_registration color
Toolshed: delay_registration colour
Toolshed: delay_registration color delete
Toolshed: delay_registration color list
Toolshed: delay_registration color name
Toolshed: delay_registration color show
Toolshed: delay_registration colordef
Toolshed: delay_registration ~colordef
Toolshed: delay_registration colourdef
Toolshed: delay_registration ~colourdef
Toolshed: delay_registration coordset
Toolshed: delay_registration crossfade
Toolshed: delay_registration delete
Toolshed: delay_registration dssp
Toolshed: delay_registration exit
Toolshed: delay_registration quit
Toolshed: delay_registration graphics
Toolshed: delay_registration hide
Toolshed: delay_registration ~show
Toolshed: delay_registration ~display
Toolshed: delay_registration lighting
Toolshed: delay_registration lighting model
Toolshed: delay_registration material
Toolshed: delay_registration measure buriedarea
Toolshed: delay_registration measure center
Toolshed: delay_registration measure convexity
Toolshed: delay_registration measure inertia
Toolshed: delay_registration measure length
Toolshed: delay_registration measure symmetry
Toolshed: delay_registration move
Toolshed: delay_registration palette
Toolshed: delay_registration pdbimages
Toolshed: delay_registration perframe
Toolshed: delay_registration ~perframe
Toolshed: delay_registration pwd
Toolshed: delay_registration rainbow
Toolshed: delay_registration rename
Toolshed: delay_registration roll
Toolshed: delay_registration runscript
Toolshed: delay_registration select
Toolshed: delay_registration ~select
Toolshed: delay_registration set
Toolshed: delay_registration ~set
Toolshed: delay_registration setattr
Toolshed: delay_registration show
Toolshed: delay_registration display
Toolshed: delay_registration size
Toolshed: delay_registration split
Toolshed: delay_registration stop
Toolshed: delay_registration style
Toolshed: delay_registration sym
Toolshed: delay_registration tile
Toolshed: delay_registration time
Toolshed: delay_registration transparency
Toolshed: delay_registration turn
Toolshed: delay_registration undo
Toolshed: delay_registration redo
Toolshed: delay_registration usage
Toolshed: delay_registration version
Toolshed: delay_registration view
Toolshed: delay_registration wait
Toolshed: delay_registration windowsize
Toolshed: delay_registration select zone
Toolshed: delay_registration zoom
Toolshed: register bundle ChimeraX-Read-Pbonds 1.0
Toolshed: register_file_type Pseudobonds
Toolshed: register bundle ChimeraX-Dist-Monitor 1.0
Toolshed: delay_registration distance
Toolshed: delay_registration ~distance
Toolshed: register bundle ChimeraX-Help 0.9a1
Toolshed: delay_registration help
Toolshed: register_file_type HTML
Toolshed: register bundle ChimeraX-MapEraser 1.0
Toolshed: delay_registration volume erase
Toolshed: register bundle ChimeraX-Map 1.0
Toolshed: delay_registration volume
Toolshed: delay_registration vop
Toolshed: delay_registration molmap
Toolshed: delay_registration measure mapstats
Toolshed: register bundle ChimeraX-ModelPanel 1.0
Toolshed: register bundle ChimeraX-Alignments 1.0
Toolshed: delay_registration sequence
Toolshed: register_file_type FASTA
Toolshed: register_file_type MSF
Toolshed: register_file_type PIR
Toolshed: register_file_type ALN
Toolshed: register_file_type HSSP
Toolshed: register_file_type Pfam
Toolshed: register_file_type RSF
Toolshed: register_file_type Stockholm
Toolshed: register bundle ChimeraX-Bug-Reporter 1.0
Toolshed: register bundle ChimeraX-TapeMeasure 1.0
Toolshed: register bundle ChimeraX-SwapRes 1.0
Toolshed: delay_registration swapaa
Toolshed: register bundle ChimeraX-PickBlobs 1.0
Toolshed: delay_registration measure blob
Toolshed: register bundle ChimeraX-MMTF 1.0
Toolshed: register_file_type MMTF
Toolshed: register bundle ChimeraX-FileHistory 1.0
Toolshed: register bundle ChimeraX-ShowAttr 1.0
Toolshed: register bundle ChimeraX-Label 1.0
Toolshed: delay_registration 2dlabels
Toolshed: delay_registration label
Toolshed: delay_registration ~label
Toolshed: register bundle ChimeraX-Tug 1.0
Toolshed: register bundle ChimeraX-Zone 1.0
Toolshed: delay_registration zone
Toolshed: register bundle ChimeraX-Log 1.0
Toolshed: delay_registration echo
Toolshed: delay_registration log
Toolshed: register bundle ChimeraX-Segger 1.0
Toolshed: register bundle ChimeraX-Mol2 1.0
Toolshed: register_file_type Sybyl Mol2
Toolshed: register bundle ChimeraX-ISOLDE 1.0b3.dev7
Toolshed: delay_registration isolde
Toolshed: delay_registration rama
Toolshed: delay_registration rota
Toolshed: delay_registration ~rama
Toolshed: delay_registration ~rota
Toolshed: register bundle ChimeraX-Markers 1.0
Toolshed: delay_registration marker
Toolshed: register_file_type Marker model
Toolshed: register bundle ChimeraX-BondRot 1.0
Toolshed: delay_registration torsion
Toolshed: register bundle ChimeraX-ButtonPanel 1.0
Toolshed: delay_registration buttonpanel
Toolshed: register bundle ChimeraX-mmCIF 1.1
Toolshed: register_file_type mmCIF
Toolshed: register bundle ChimeraX-Clashes 1.0
Toolshed: delay_registration clashes
Toolshed: delay_registration contacts
Toolshed: delay_registration ~clashes
Toolshed: delay_registration ~contacts
Toolshed: register bundle ChimeraX-BasicActions 0.1
Toolshed: delay_registration name
Toolshed: delay_registration name frozen
Toolshed: delay_registration name delete
Toolshed: delay_registration name list
Toolshed: register bundle ChimeraX-FunctionKey 1.0
Toolshed: delay_registration ui functionkey
Toolshed: delay_registration functionkey
Toolshed: register bundle ChimeraX-ModelSeries 1.0
Toolshed: delay_registration mseries
Toolshed: register bundle ChimeraX-Contacts 1.0
Toolshed: delay_registration interfaces
Toolshed: register bundle ChimeraX-Shortcuts 1.0
Toolshed: delay_registration ks
Toolshed: register bundle ChimeraX-Connect-Structure 1.0
Toolshed: register bundle ChimeraX-VolumeMenu 1.0
Toolshed: register bundle ChimeraX-Dist-UI 1.0
Toolshed: register bundle ChimeraX-SwapAA 1.0
Toolshed: delay_registration swapaa mousemode
Toolshed: register bundle ChimeraX-Shell 1.0
Toolshed: register bundle ChimeraX-Hbonds 1.0
Toolshed: delay_registration hbonds
Toolshed: delay_registration ~hbonds
Toolshed: register bundle ChimeraX-Registration 0.1
Toolshed: delay_registration registration status
Toolshed: register bundle ChimeraX-ResidueFit 1.0
Toolshed: delay_registration resfit
Toolshed: register bundle ChimeraX-Cage-Builder 1.0
Toolshed: delay_registration cage
Toolshed: register bundle ChimeraX-CommandLine 1.0
Toolshed: register bundle ChimeraX-SideView 1.0
Toolshed: register bundle ChimeraX-Mask 1.0
Toolshed: delay_registration volume mask
Toolshed: delay_registration volume onesmask
Toolshed: register bundle ChimeraX-AlignmentMatrices 1.0
Toolshed: register bundle ChimeraX-MapSeries 1.0
Toolshed: delay_registration vseries
Toolshed: delay_registration measure motion
Toolshed: register bundle ChimeraX-IHM 1.0
Toolshed: register_file_type IHM
Toolshed: register bundle ChimeraX-AddH 1.0
Toolshed: delay_registration addh
Toolshed: register bundle ChimeraX-Modeller 1.0
Toolshed: delay_registration modeller comparative
Toolshed: delay_registration modeller scores
Toolshed: register bundle ChimeraX-Bumps 1.0
Toolshed: delay_registration bumps
Toolshed: delay_registration cbumps
Toolshed: register bundle ChimeraX-AlignmentHdrs 1.0
Toolshed: register bundle ChimeraX-Toolbar 0.1
Toolshed: register bundle ChimeraX-MapFit 1.0
Toolshed: delay_registration fitmap
Toolshed: register bundle ChimeraX-uniprot 1.0
Toolshed: register_file_type UniProt
Toolshed: register bundle ChimeraX-Crosslinks 1.0
Toolshed: delay_registration crosslinks
Toolshed: register bundle ChimeraX-BlastProtein 0.1
Toolshed: delay_registration blastprotein
Toolshed: delay_registration blastpdb
Toolshed: register bundle ChimeraX-MapFilter 1.0
Toolshed: register bundle ChimeraX-Surface 1.0
Toolshed: delay_registration color electrostatic
Toolshed: delay_registration color sample
Toolshed: delay_registration color gradient
Toolshed: delay_registration color radial
Toolshed: delay_registration color cylindrical
Toolshed: delay_registration color height
Toolshed: delay_registration surface
Toolshed: delay_registration ~surface
Toolshed: delay_registration volume splitbyzone
Toolshed: delay_registration sop
Toolshed: delay_registration measure sasa
Toolshed: delay_registration measure volume
Toolshed: delay_registration measure area
Toolshed: register_file_type Collada
Toolshed: register bundle ChimeraX-AlignmentAlgorithms 1.0
Toolshed: register bundle ChimeraX-ViewDockX 0.1
Toolshed: delay_registration viewdockx
Toolshed: delay_registration viewdockx down
Toolshed: delay_registration viewdockx up
Toolshed: register_file_type mol2
Toolshed: register_file_type pdbqt
Toolshed: register bundle ChimeraX-MatchMaker 1.0
Toolshed: delay_registration matchmaker
Toolshed: delay_registration mmaker
Toolshed: register bundle ChimeraX-BILD 0.1
Toolshed: register_file_type BILD
Toolshed: register bundle ChimeraX-Nucleotides 0.1
Toolshed: delay_registration nucleotides
Toolshed: delay_registration ~nucleotides
Toolshed: register bundle ChimeraX-SeqView 1.0
Toolshed: finished loading bundles
50.00% done: Initializing bundles
Toolshed: initialize_bundles False
Toolshed: initialize manager presets for bundle 'ChimeraX-Preset-Mgr'
Toolshed: initialize manager rotamers for bundle 'ChimeraX-Rotamer-Lib-Mgr'
Toolshed: skip non-GUI manager url_schemes for bundle 'ChimeraX-Scheme-Mgr'
Toolshed: initialize manager alignments for bundle 'ChimeraX-Alignments'
Toolshed: skip non-GUI manager toolbar for bundle 'ChimeraX-Toolbar'
Toolshed: custom initialization for bundle 'ChimeraX-Vive'
Toolshed: custom initialization for bundle 'ChimeraX-RestServer'
Toolshed: custom initialization for bundle 'ChimeraX-Atomic'
Toolshed: custom initialization for bundle 'ChimeraX-MouseModes'
Toolshed: custom initialization for bundle 'ChimeraX-Dicom'
Toolshed: custom initialization for bundle 'ChimeraX-ChemGroup'
Toolshed: custom initialization for bundle 'ChimeraX-Dist-Monitor'
Toolshed: custom initialization for bundle 'ChimeraX-Help'
Toolshed: custom initialization for bundle 'ChimeraX-MapEraser'
Toolshed: custom initialization for bundle 'ChimeraX-Map'
Toolshed: custom initialization for bundle 'ChimeraX-Bug-Reporter'
Toolshed: custom initialization for bundle 'ChimeraX-TapeMeasure'
Toolshed: custom initialization for bundle 'ChimeraX-PickBlobs'
Toolshed: custom initialization for bundle 'ChimeraX-Label'
Toolshed: custom initialization for bundle 'ChimeraX-Tug'
Toolshed: custom initialization for bundle 'ChimeraX-Zone'
Toolshed: custom initialization for bundle 'ChimeraX-Log'
Toolshed: custom initialization for bundle 'ChimeraX-Segger'
Toolshed: custom initialization for bundle 'ChimeraX-ISOLDE'
Toolshed: custom initialization for bundle 'ChimeraX-Markers'
Toolshed: custom initialization for bundle 'ChimeraX-BondRot'
Toolshed: custom initialization for bundle 'ChimeraX-BasicActions'
Toolshed: custom initialization for bundle 'ChimeraX-FunctionKey'
Toolshed: custom initialization for bundle 'ChimeraX-VolumeMenu'
Toolshed: custom initialization for bundle 'ChimeraX-Dist-UI'
Toolshed: custom initialization for bundle 'ChimeraX-SwapAA'
Toolshed: custom initialization for bundle 'ChimeraX-Registration'
Toolshed: custom initialization for bundle 'ChimeraX-CommandLine'
Toolshed: custom initialization for bundle 'ChimeraX-MapSeries'
Toolshed: custom initialization for bundle 'ChimeraX-Surface'
Toolshed: custom initialization for bundle 'ChimeraX-ViewDockX'
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None
Toolshed: find_bundle ChimeraX-Core True None
Toolshed: find_bundle ChimeraX-Atomic True None

----------------------------------------------------------------------
Ran 0 tests in 0.000s

OK
Toolshed: install_bundle .\dist\ChimeraX_Clipper-0.9.12-cp37-cp37m-win_amd64.whl
Toolshed: find_bundle ChimeraX_Clipper True None
Toolshed: deregister_command clipper
Toolshed: deregister_command cview
Toolshed: _run_pip command: ['install', '--upgrade', '--extra-index-url', 'https://cxtoolshed.rbvi.ucsf.edu/pypi/', '--upgrade-strategy', 'only-if-needed', '--user', '.\\dist\\ChimeraX_Clipper-0.9.12-cp37-cp37m-win_amd64.whl']
Toolshed: _run_pip result: Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/

Processing c:\users\tic20\my-gits\chimerax-clipper\dist\chimerax_clipper-0.9.12-cp37-cp37m-win_amd64.whl

Requirement already satisfied, skipping upgrade: ChimeraX-Atomic>=1.0 in c:\program files\chimerax-daily\chimerax\bin\lib\site-packages (from ChimeraX-Clipper==0.9.12) (1.0)

Requirement already satisfied, skipping upgrade: ChimeraX-Core==0.91 in c:\program files\chimerax-daily\chimerax\bin\lib\site-packages (from ChimeraX-Clipper==0.9.12) (0.91)

Installing collected packages: ChimeraX-Clipper

Successfully installed ChimeraX-Clipper-0.9.12


Toolshed: set_install_timestamp
Toolshed: reload True False
Toolshed: _bundle_cache False
Toolshed: InstalledBundleCache.load: rebuild_cache True
Toolshed: InstalledBundleCache.load: rebuilding cache
Toolshed: InstalledBundleCache.load: package ChimeraX-ISOLDE 1.0b3.dev7
Toolshed: InstalledBundleCache.load: bundle ChimeraX-ISOLDE (installed) [version: 1.0b3.dev7] [api package: chimerax.isolde] [category: General] [tool: ISOLDE [categories: General] [synopsis: Interactive Molecular Dynamics Flexible Fitting (iMDFF)]] [command: isolde [categories: General] [synopsis: Command-line control of ISOLDE simulations]] [command: rama [categories: General] [synopsis: Live Ramachandran validation of models]] [command: rota [categories: General] [synopsis: Live rotamer validation of models]] [command: ~rama [categories: General] [synopsis: Turn off live Ramachandran validation of models]] [command: ~rota [categories: General] [synopsis: Turn off live rotamer validation of models]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Clipper 0.9.11
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Toolshed: InstalledBundleCache._make_bundle_info: no ChimeraX bundle in colorama 0.4.1
Toolshed: InstalledBundleCache.load: package ChimeraX-Zone 1.0
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Toolshed: InstalledBundleCache.load: package ChimeraX-WebServices 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-WebServices (installed) [version: 1.0] [api package: chimerax.webservices] [category: General]
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Toolshed: InstalledBundleCache.load: package ChimeraX-Vive 1.0
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Toolshed: InstalledBundleCache.load: package ChimeraX-ViewDockX 0.1
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Toolshed: InstalledBundleCache.load: package ChimeraX-UI 1.0
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Toolshed: InstalledBundleCache.load: package ChimeraX-Test 1.0
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Toolshed: InstalledBundleCache.load: package ChimeraX-TapeMeasure 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-TapeMeasure (installed) [version: 1.0] [api package: chimerax.atomic.tape_measure] [category: General]
Toolshed: InstalledBundleCache.load: package ChimeraX-SwapRes 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-SwapRes (installed) [version: 1.0] [api package: chimerax.atomic.rotamers.command] [category: Structure Editing] [tool: Rotamers [categories: General] [synopsis: swap residue side chain]] [command: swapaa [categories: Structure Editing] [synopsis: swap residue side chain]]
Toolshed: InstalledBundleCache.load: package ChimeraX-SwapAA 1.0
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Toolshed: InstalledBundleCache.load: package ChimeraX-Surface 1.0
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Toolshed: InstalledBundleCache.load: package ChimeraX-Struts 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Struts (installed) [version: 1.0] [api package: chimerax.struts] [category: Molecular structure] [command: struts [categories: Molecular structure] [synopsis: provide struts for 3D printing]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Storm 1.0
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Toolshed: InstalledBundleCache.load: package ChimeraX-STL 1.0
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[command: measure length [categories: Volume] [synopsis: measure path length of connected markers]] [command: measure symmetry [categories: Volume] [synopsis: compute map symmetry]] [command: move [categories: General Controls] [synopsis: move (parts of) a model relative to others]] [command: palette [categories: General Controls] [synopsis: list available color palettes]] [command: pdbimages [categories: Input/Output] [synopsis: batch processing of mmCIF files into images]] [command: perframe [categories: General Controls] [synopsis: execute commands every frame]] [command: ~perframe [categories: General Controls] [synopsis: stop execution of commands every frame]] [command: pwd [categories: Utilities] [synopsis: report current working directory]] [command: rainbow [categories: Depiction] [synopsis: "rainbow" color (parts of) structures]] [command: rename [categories: General Controls] [synopsis: change name or ID of model]] [command: roll [categories: General Controls] [synopsis: continuously turn model(s) about an axis]] [command: runscript [categories: General Controls] [synopsis: run a Python script with arguments]] [command: select [categories: General Controls] [synopsis: select models or parts thereof]] [command: ~select [categories: General Controls] [synopsis: unselect models or parts thereof]] [command: set [categories: General Controls] [synopsis: set various global parameters]] [command: ~set [categories: General Controls] [synopsis: revert various global parameters to their default value]] [command: setattr [categories: General Controls] [synopsis: set Python attribute values for structure elements]] [command: show [categories: Viewing Controls] [synopsis: display (parts of) a model]] [command: display [categories: Viewing Controls] [synopsis: display (parts of) a model]] [command: size [categories: Depiction] [synopsis: change display size of structural elements]] [command: split [categories: General Controls] [synopsis: split a model into multiple models]] [command: stop [categories: General Controls] [synopsis: stop an ongoing motion]] [command: style [categories: Depiction] [synopsis: change style of depiction for strcutural elements]] [command: sym [categories: Higher-Order Structure] [synopsis: generate symmetry mates]] [command: tile [categories: General Controls] [synopsis: tile models onto grid]] [command: time [categories: Utilities] [synopsis: time execution and redisplay of commands]] [command: transparency [categories: Depiction] [synopsis: change transparency of (parts of) models]] [command: turn [categories: General Controls] [synopsis: rotate a model about an axis]] [command: undo [categories: General Controls] [synopsis: undo a command]] [command: redo [categories: General Controls] [synopsis: redo an undone command]] [command: usage [categories: Utilities] [synopsis: show the required syntax for a command]] [command: version [categories: Utilities] [synopsis: report ChimeraX version number]] [command: view [categories: Viewing Controls] [synopsis: change/save/restore 3D view]] [command: wait [categories: Movie Making] [synopsis: wait a given amount of frames before executing the next command]] [command: windowsize [categories: General Controls] [synopsis: set the size of the 3D window]] [command: select zone [categories: General Controls] [synopsis: select (parts of) models within a 3D zone]] [command: zoom [categories: Viewing Controls] [synopsis: zoom in/out]]
Toolshed: InstalledBundleCache.load: package ChimeraX-SpaceNavigator 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-SpaceNavigator (installed) [version: 1.0] [api package: chimerax.spacenavigator] [category: General] [command: device snav [categories: General] [synopsis: Control SpaceNavigator device]]
Toolshed: InstalledBundleCache.load: package ChimeraX-SmoothLines 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-SmoothLines (installed) [version: 1.0] [api package: chimerax.smooth_lines] [category: General] [command: smoothlines [categories: General] [synopsis: Smooth networks of lines]]
Toolshed: InstalledBundleCache.load: package ChimeraX-SideView 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-SideView (installed) [version: 1.0] [api package: chimerax.sideview] [category: General] [tool: Side View [categories: General] [synopsis: Show side view interface]]
Toolshed: InstalledBundleCache.load: package ChimeraX-ShowAttr 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-ShowAttr (installed) [version: 1.0] [api package: chimerax.show_attr] [category: Depiction]
Toolshed: InstalledBundleCache.load: package ChimeraX-Shortcuts 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Shortcuts (installed) [version: 1.0] [api package: chimerax.shortcuts] [category: Toolbar] [command: ks [categories: Toolbar] [synopsis: keyboard shortcuts]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Shell 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Shell (installed) [version: 1.0] [api package: chimerax.shell] [category: General] [tool: Shell [categories: General] [synopsis: Python shell]]
Toolshed: InstalledBundleCache.load: package ChimeraX-SeqView 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-SeqView (installed) [version: 1.0] [api package: chimerax.seq-view] [category: Sequence]
Toolshed: InstalledBundleCache.load: package ChimeraX-Segment 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Segment (installed) [version: 1.0] [api package: chimerax.segment] [category: Volume data]
Toolshed: InstalledBundleCache.load: package ChimeraX-Segger 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Segger (installed) [version: 1.0] [api package: chimerax.segger] [category: Volume data] [tool: Segment Map [categories: Volume Data] [synopsis: Segment density maps using Segger algorithms]] [tool: Fit to Segments [categories: Volume Data] [synopsis: Fit atomic models in segmented maps]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Scheme-Mgr 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Scheme-Mgr (installed) [version: 1.0] [api package: chimerax.scheme_mgr] [category: Utilities]
Toolshed: InstalledBundleCache.load: package ChimeraX-RotamerLibs-Richardson 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-RotamerLibs-Richardson (installed) [version: 1.0] [api package: chimerax.atomic.rotamers.libs.richardson] [category: Structure Editing]
Toolshed: InstalledBundleCache.load: package ChimeraX-RotamerLibs-Dynameomics 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-RotamerLibs-Dynameomics (installed) [version: 1.0] [api package: chimerax.atomic.rotamers.libs.dynameomics] [category: Structure Editing]
Toolshed: InstalledBundleCache.load: package ChimeraX-RotamerLibs-Dunbrack 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-RotamerLibs-Dunbrack (installed) [version: 1.0] [api package: chimerax.atomic.rotamers.libs.dunbrack] [category: Structure Editing]
Toolshed: InstalledBundleCache.load: package ChimeraX-Rotamer-Lib-Mgr 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Rotamer-Lib-Mgr (installed) [version: 1.0] [api package: chimerax.atomic.rotamers] [category: Structure Editing]
Toolshed: InstalledBundleCache.load: package ChimeraX-RestServer 0.1
Toolshed: InstalledBundleCache.load: bundle ChimeraX-RestServer (installed) [version: 0.1] [api package: chimerax.rest_server] [category: General] [command: remotecontrol rest [categories: General] [synopsis: Control REST server]]
Toolshed: InstalledBundleCache.load: package ChimeraX-ResidueFit 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-ResidueFit (installed) [version: 1.0] [api package: chimerax.residue_fit] [category: General] [command: resfit [categories: General] [synopsis: Display slider to show fit of each residue in density map]]
Toolshed: InstalledBundleCache.load: package ChimeraX-RemoteControl 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-RemoteControl (installed) [version: 1.0] [api package: chimerax.remote_control] [category: General] [tool: Remote Control [categories: General] [synopsis: Send commands to ChimeraX from other apps]] [command: remotecontrol xmlrpc [categories: General] [synopsis: synopsis]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Registration 0.1
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Registration (installed) [version: 0.1] [api package: chimerax.registration] [category: Utilities] [tool: Registration [categories: Utilities] [synopsis: Register ChimeraX with RBVI]] [command: registration status [categories: Utilities] [synopsis: Report registration status]]
Toolshed: InstalledBundleCache.load: package ChimeraX-RealSense 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-RealSense (installed) [version: 1.0] [api package: chimerax.realsense] [category: General] [command: device realsense [categories: General] [synopsis: Show Intel RealSense camera video]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Read-Pbonds 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Read-Pbonds (installed) [version: 1.0] [api package: chimerax.read_pbonds] [category: Generic 3D objects] [data format: Pseudobonds [category: Generic 3D objects] [suffixes: .pb] [encoding: utf-8] [synopsis: Interatomic pseudobonds]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Preset-Mgr 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Preset-Mgr (installed) [version: 1.0] [api package: chimerax.preset_mgr] [category: Depiction] [command: preset [categories: Depiction] [synopsis: apply "preset" depiction to models]]
Toolshed: InstalledBundleCache.load: package ChimeraX-PickBlobs 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-PickBlobs (installed) [version: 1.0] [api package: chimerax.pick_blobs] [category: Volume data] [tool: Measure and Color Blobs [categories: Volume Data] [synopsis: Measure and color connected parts of surfaces]] [command: measure blob [categories: Measure and Color Blobs] [synopsis: Measure and color connected parts of surfaces]]
Toolshed: InstalledBundleCache.load: package ChimeraX-PDB 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-PDB (installed) [version: 1.0] [api package: chimerax.atomic.pdb] [category: Molecular structure] [data format: PDB [category: Molecular structure] [suffixes: .pdb, .pdb1, .ent, .pqr] [url: http://www.wwpdb.org/documentation/file-format] [synopsis: Protein Databank Format (PDB)]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Nucleotides 0.1
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Nucleotides (installed) [version: 0.1] [api package: chimerax.atomic.nucleotides] [category: General] [command: nucleotides [categories: General] [synopsis: Manipulate nucleotide representations]] [command: ~nucleotides [categories: General] [synopsis: Undo nucleotide representations]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Movie 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Movie (installed) [version: 1.0] [api package: chimerax.movie] [category: General] [command: movie [categories: General] [synopsis: record movies]]
Toolshed: InstalledBundleCache.load: package ChimeraX-MouseModes 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MouseModes (installed) [version: 1.0] [api package: chimerax.mouse_modes] [category: Toolbar] [command: ui mousemode [categories: User interface] [synopsis: set/list mouse modes]] [command: mousemode [categories: User interface] [synopsis: set/list mouse modes]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Morph 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Morph (installed) [version: 1.0] [api package: chimerax.morph] [category: Morph Structures] [command: morph [categories: Molecular structure] [synopsis: morph atomic structures]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Mol2 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Mol2 (installed) [version: 1.0] [api package: chimerax.atomic.mol2] [category: I/O] [data format: Sybyl Mol2 [category: Molecular structure] [suffixes: .mol2] [encoding: utf-8] [synopsis: Sybyl Mol2 format]]
Toolshed: InstalledBundleCache.load: package ChimeraX-ModelSeries 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-ModelSeries (installed) [version: 1.0] [api package: chimerax.model_series] [category: General] [command: mseries [categories: General] [synopsis: Display sequence of models one by one]]
Toolshed: InstalledBundleCache.load: package ChimeraX-ModelPanel 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-ModelPanel (installed) [version: 1.0] [api package: chimerax.model_panel] [category: General] [tool: Model Panel [categories: General] [synopsis: model panel]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Modeller 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Modeller (installed) [version: 1.0] [api package: chimerax.modeller] [category: Sequence] [tool: Modeller Comparative [categories: Sequence] [synopsis: Generate comparative models]] [command: modeller comparative [categories: Sequence] [synopsis: Generate comparative model]] [command: modeller scores [categories: Sequence] [synopsis: Fetch Modeller scores for a model]]
Toolshed: InstalledBundleCache.load: package ChimeraX-MMTF 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MMTF (installed) [version: 1.0] [api package: chimerax.atomic.mmtf] [category: Molecular structure] [data format: MMTF [category: Molecular structure] [suffixes: .mmtf] [url: http://mmtf.rcsb.org/] [synopsis: Macromolecular Transmission Format (MMTF)]]
Toolshed: InstalledBundleCache.load: package ChimeraX-mmCIF 1.1
Toolshed: InstalledBundleCache.load: bundle ChimeraX-mmCIF (installed) [version: 1.1] [api package: chimerax.atomic.mmcif] [category: Molecular structure] [data format: mmCIF [category: Molecular structure] [suffixes: .cif, .mmcif] [mime_types: chemical/x-mmcif] [url: http://mmcif.wwpdb.org/] [synopsis: Macromolecular CIF]]
Toolshed: InstalledBundleCache.load: package ChimeraX-MLP 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MLP (installed) [version: 1.0] [api package: chimerax.mlp] [category: Molecular structure] [command: mlp [categories: Molecular structure] [synopsis: Molecular lipophilicity calculation]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Meeting 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Meeting (installed) [version: 1.0] [api package: chimerax.meeting] [category: General] [command: meeting [categories: General] [synopsis: Shared interactive sessions]]
Toolshed: InstalledBundleCache.load: package ChimeraX-MD-crds 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MD-crds (installed) [version: 1.0] [api package: chimerax.atomic.md_crds] [category: Molecular Dynamics] [data format: Gromacs full-precision coordinates [category: Molecular trajectory] [suffixes: .trr] [url: http://manual.gromacs.org/online/trr.html] [encoding: utf-8] [synopsis: Gromacs trr format]] [data format: Gromacs compressed coordinates [category: Molecular trajectory] [suffixes: .xtc] [url: http://manual.gromacs.org/online/xtc.html] [encoding: utf-8] [synopsis: Gromacs xtc format]] [data format: DCD coordinates [category: Molecular trajectory] [suffixes: .dcd] [encoding: utf-8] [synopsis: DCD trajectory format]]
Toolshed: InstalledBundleCache.load: package ChimeraX-MatchMaker 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MatchMaker (installed) [version: 1.0] [api package: chimerax.match_maker] [category: Sequence] [command: matchmaker [categories: Structure Comparison] [synopsis: Superimpose structures]] [command: mmaker [categories: Structure Comparison] [synopsis: alias of matchmaker]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Mask 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Mask (installed) [version: 1.0] [api package: chimerax.mask] [category: Volume Data] [command: volume mask [categories: Volume data] [synopsis: Mask a map to a surface]] [command: volume onesmask [categories: Volume data] [synopsis: Create a onesmask inside a surface]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Markers 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Markers (installed) [version: 1.0] [api package: chimerax.markers] [category: Volume Data] [tool: Marker Placement [categories: Volume Data] [synopsis: Place markers on density maps]] [command: marker [categories: General] [synopsis: Place markers]] [data format: Marker model [category: Generic 3D objects] [suffixes: .cmm] [url: http://rbvi.ucsf.edu/chimerax/docs/user/markers.html#markerfiles] [synopsis: Markers and links]]
Toolshed: InstalledBundleCache.load: package ChimeraX-MapSeries 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MapSeries (installed) [version: 1.0] [api package: chimerax.map.series] [category: Volume Data] [command: vseries [categories: Volume data] [synopsis: volume series]] [command: measure motion [categories: Volume data] [synopsis: volume series cactus prickles]]
Toolshed: InstalledBundleCache.load: package ChimeraX-MapFit 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MapFit (installed) [version: 1.0] [api package: chimerax.map.fit] [category: Volume Data] [tool: Fit in Map [categories: Volume Data] [synopsis: Fit molecules in maps]] [command: fitmap [categories: Volume data] [synopsis: fit molecules in maps]]
Toolshed: InstalledBundleCache.load: package ChimeraX-MapFilter 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MapFilter (installed) [version: 1.0] [api package: chimerax.map.filter] [category: Volume Data]
Toolshed: InstalledBundleCache.load: package ChimeraX-MapEraser 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MapEraser (installed) [version: 1.0] [api package: chimerax.map_eraser] [category: Volume data] [tool: Map Eraser [categories: Volume Data] [synopsis: Erase part of a density map within a sphere]] [command: volume erase [categories: Erase image data] [synopsis: Erase part of a density map within a sphere]]
Toolshed: InstalledBundleCache.load: package ChimeraX-MapData 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-MapData (installed) [version: 1.0] [api package: chimerax.map.data] [category: Volume Data]
Toolshed: InstalledBundleCache.load: package ChimeraX-Map 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Map (installed) [version: 1.0] [api package: chimerax.map] [category: Volume Data] [tool: Volume Viewer [categories: Volume Data] [synopsis: Show density maps info]] [tool: Map Coordinates [categories: Volume Data] [synopsis: Adjust density map coordinates]] [command: volume [categories: Volume data] [synopsis: control volume data display]] [command: vop [categories: Volume data] [synopsis: filter volume data]] [command: molmap [categories: Volume data] [synopsis: create density map for molecule]] [command: measure mapstats [categories: Volume data] [synopsis: report map statistics]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Log 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Log (installed) [version: 1.0] [api package: chimerax.log] [category: General] [tool: Log [categories: General] [synopsis: Log of information and output]] [command: echo [categories: General] [synopsis: Log a line of text]] [command: log [categories: General] [synopsis: manipulate the Log tool]]
Toolshed: InstalledBundleCache.load: package ChimeraX-List-Info 0.1
Toolshed: InstalledBundleCache.load: bundle ChimeraX-List-Info (installed) [version: 0.1] [api package: chimerax.list_info] [category: General] [command: info [categories: General] [synopsis: Report attributes for models and atomic data]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Label 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Label (installed) [version: 1.0] [api package: chimerax.label] [category: General] [command: 2dlabels [categories: General] [synopsis: add text labels to graphics]] [command: label [categories: General] [synopsis: add 3d labels to graphics]] [command: ~label [categories: General] [synopsis: remove 3d labels from graphics]]
Toolshed: InstalledBundleCache.load: package ChimeraX-IHM 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-IHM (installed) [version: 1.0] [api package: chimerax.ihm] [category: Higher-Order Structure] [data format: IHM [category: Higher-Order Structure] [suffixes: .ihm] [url: https://pdb-dev.wwpdb.org/about/] [synopsis: Integrative Hybrid Models data]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Help 0.9a1
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Help (installed) [version: 0.9a1] [api package: chimerax.help_viewer] [category: Documentation] [command: help [categories: Documentation] [synopsis: Display ChimeraX help]] [data format: HTML [category: Documentation] [suffixes: .html, .htm, .xhtml, .xht, .xml] [mime_types: text/html, application/xhtml+xml] [url: http://en.wikipedia.org/wiki/Html] [synopsis: HyperText Markup Language (HTML)]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Hbonds 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Hbonds (installed) [version: 1.0] [api package: chimerax.atomic.hbonds] [category: Structure Analysis] [tool: H-Bonds [categories: Structure Analysis] [synopsis: Find hydrogen bonds]] [command: hbonds [categories: Structure Analysis] [synopsis: Find hydrogen bonds]] [command: ~hbonds [categories: Structure Analysis] [synopsis: Clear hydrogen bonds]]
Toolshed: InstalledBundleCache.load: package ChimeraX-gltf 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-gltf (installed) [version: 1.0] [api package: chimerax.gltf] [category: Generic 3D objects] [data format: glTF [category: Generic 3D objects] [suffixes: .glb] [url: https://github.com/KhronosGroup/glTF] [synopsis: Surface format used in 3D modeling]]
Toolshed: InstalledBundleCache.load: package ChimeraX-FunctionKey 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-FunctionKey (installed) [version: 1.0] [api package: chimerax.function_key] [category: General] [command: ui functionkey [categories: General] [synopsis: Assign function keys to run commands]] [command: functionkey [categories: General] [synopsis: Assign function keys to run commands]]
Toolshed: InstalledBundleCache.load: package ChimeraX-FileHistory 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-FileHistory (installed) [version: 1.0] [api package: chimerax.file_history] [category: General] [tool: File History [categories: General] [synopsis: Show recently opened files]]
Toolshed: InstalledBundleCache.load: package ChimeraX-ExperimentalCommands 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-ExperimentalCommands (installed) [version: 1.0] [api package: chimerax.exp_cmd] [category: General] [command: ribbon [categories: General] [synopsis: show cartoon for selected residues]] [command: ribbon hide [categories: General] [synopsis: hide cartoon for selected residues]] [command: ~ribbon [categories: General] [synopsis: hide cartoon for selected residues]] [command: getcrd [categories: General] [synopsis: report atomic coordinates]] [command: debug dumpspec [categories: General] [synopsis: report what a specifier matches]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Dssp 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Dssp (installed) [version: 1.0] [api package: chimerax.atomic.dssp] [category: Structure Analysis]
Toolshed: InstalledBundleCache.load: package ChimeraX-Dist-UI 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Dist-UI (installed) [version: 1.0] [api package: chimerax.dist_ui] [category: Structure Analysis] [tool: Distances [categories: Structure Analysis] [synopsis: inter-atomic distances]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Dist-Monitor 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Dist-Monitor (installed) [version: 1.0] [api package: chimerax.dist_monitor] [category: Structure Analysis] [command: distance [categories: Structure Analysis] [synopsis: determine distance]] [command: ~distance [categories: Structure Analysis] [synopsis: remove distance monitors]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Dicom 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Dicom (installed) [version: 1.0] [api package: chimerax.dicom] [category: Volume Data]
Toolshed: InstalledBundleCache.load: package ChimeraX-Crystal 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Crystal (installed) [version: 1.0] [api package: chimerax.crystal] [category: Generic 3D objects]
Toolshed: InstalledBundleCache.load: package ChimeraX-Crosslinks 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Crosslinks (installed) [version: 1.0] [api package: chimerax.crosslinks] [category: General] [command: crosslinks [categories: General] [synopsis: Plot or minimize crosslink lengths]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Core 0.91
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Core (installed) [version: 0.91] [api package: chimerax.core] [category: Core]
Toolshed: InstalledBundleCache.load: package ChimeraX-Contacts 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Contacts (installed) [version: 1.0] [api package: chimerax.interfaces] [category: Molecular structure] [command: interfaces [categories: Molecular structure] [synopsis: Display chain contact maps]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Connect-Structure 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Connect-Structure (installed) [version: 1.0] [api package: chimerax.atomic.connect_structure] [category: Structure Analysis]
Toolshed: InstalledBundleCache.load: package ChimeraX-CommandLine 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-CommandLine (installed) [version: 1.0] [api package: chimerax.cmd_line] [category: General] [tool: Command Line Interface [categories: General] [synopsis: Command Line Interface]]
Toolshed: InstalledBundleCache.load: package ChimeraX-ColorGlobe 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-ColorGlobe (installed) [version: 1.0] [api package: chimerax.color_globe] [category: General] [data format: Directional FSC [category: Generic 3D objects] [suffixes: .dres] [encoding: utf-8] [synopsis: Direction dependent resolution values]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Clashes 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Clashes (installed) [version: 1.0] [api package: chimerax.atomic.clashes] [category: Structure Analysis] [command: clashes [categories: Structure Analysis] [synopsis: Find atoms with steric clashes]] [command: contacts [categories: Structure Analysis] [synopsis: Finds atoms in contact with one another]] [command: ~clashes [categories: Structure Analysis] [synopsis: Clear clash pseudobond]] [command: ~contacts [categories: Structure Analysis] [synopsis: Clear contact pseudobond]]
Toolshed: InstalledBundleCache.load: package ChimeraX-ChemGroup 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-ChemGroup (installed) [version: 1.0] [api package: chimerax.atomic.chem_group] [category: Structure Analysis]
Toolshed: InstalledBundleCache.load: package ChimeraX-CellPack 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-CellPack (installed) [version: 1.0] [api package: chimerax.cellpack] [category: Molecular structure] [data format: cellpack [category: Molecular structure] [url: http://www.cellpack.org/] [synopsis: cellpack data]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Cage-Builder 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Cage-Builder (installed) [version: 1.0] [api package: chimerax.cage_builder] [category: Higher-Order Structure] [tool: Cage Builder [categories: Higher-Order Structure] [synopsis: Build polygonal meshes]] [command: cage [categories: Higher-Order Structure] [synopsis: Place copies of model on polygons of cage]]
Toolshed: InstalledBundleCache.load: package ChimeraX-ButtonPanel 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-ButtonPanel (installed) [version: 1.0] [api package: chimerax.buttonpanel] [category: General] [command: buttonpanel [categories: General] [synopsis: Create custom user interface panels]]
Toolshed: InstalledBundleCache.load: package ChimeraX-BundleBuilder 1.0
Toolshed: InstalledBundleCache._make_bundle_info: no ChimeraX bundle in ChimeraX-BundleBuilder 1.0
Toolshed: InstalledBundleCache.load: package ChimeraX-Bumps 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Bumps (installed) [version: 1.0] [api package: chimerax.bumps] [category: Volume Data] [command: bumps [categories: Volume Data] [synopsis: find protrusions in density maps]] [command: cbumps [categories: Volume Data] [synopsis: find convex surface patches]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Bug-Reporter 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Bug-Reporter (installed) [version: 1.0] [api package: chimerax.bug_reporter] [category: General]
Toolshed: InstalledBundleCache.load: package ChimeraX-BondRot 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-BondRot (installed) [version: 1.0] [api package: chimerax.atomic.bond_rot] [category: Structure Editing] [command: torsion [categories: Report or set torsion angle] [synopsis: Report torsion angle of 4 atoms, or set it (middle two atoms much be bonded for setting)]]
Toolshed: InstalledBundleCache.load: package ChimeraX-BlastProtein 0.1
Toolshed: InstalledBundleCache.load: bundle ChimeraX-BlastProtein (installed) [version: 0.1] [api package: chimerax.blastprotein] [category: Sequence] [tool: Blast Protein [categories: Sequence] [synopsis: Search PDB/NR using BLAST]] [command: blastprotein [categories: Sequence] [synopsis: Search PDB/NR using BLAST]] [command: blastpdb [categories: Sequence] [synopsis: Search PDB/NR using BLAST]]
Toolshed: InstalledBundleCache.load: package ChimeraX-BILD 0.1
Toolshed: InstalledBundleCache.load: bundle ChimeraX-BILD (installed) [version: 0.1] [api package: chimerax.bild] [category: Generic 3D objects] [data format: BILD [category: Generic 3D objects] [suffixes: .bild, .bld] [url: help:user/formats/bild.html] [synopsis: UCSF Chimera BILD format]]
Toolshed: InstalledBundleCache.load: package ChimeraX-BasicActions 0.1
Toolshed: InstalledBundleCache.load: bundle ChimeraX-BasicActions (installed) [version: 0.1] [api package: chimerax.basic_actions] [category: General] [tool: Basic Actions [categories: General] [synopsis: show/hide atoms, ribbons and surfaces]] [command: name [categories: General] [synopsis: Define specifier name as a string]] [command: name frozen [categories: General] [synopsis: Define specifier name as atoms in current session matching a string]] [command: name delete [categories: General] [synopsis: Remove user-defined specifier name]] [command: name list [categories: General] [synopsis: List user-defined specifier names]]
Toolshed: InstalledBundleCache.load: package ChimeraX-Atomic 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Atomic (installed) [version: 1.0] [api package: chimerax.atomic] [category: Structure Analysis, Structure Editing]
Toolshed: InstalledBundleCache.load: package ChimeraX-Atom-Search 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Atom-Search (installed) [version: 1.0] [api package: chimerax.atomic.search] [category: Structure Analysis]
Toolshed: InstalledBundleCache.load: package ChimeraX-Alignments 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-Alignments (installed) [version: 1.0] [api package: chimerax.seqalign] [category: Sequence] [command: sequence [categories: Sequence alignment] [synopsis: control/open sequence alignments]] [data format: FASTA [category: Sequence alignment] [suffixes: .fa, .fasta, .afasta, .afa] [url: https://en.wikipedia.org/wiki/FASTA_format] [encoding: utf-8] [synopsis: FASTA format]] [data format: MSF [category: Sequence alignment] [suffixes: .msf] [encoding: utf-8] [synopsis: GCG MSF (multiple sequence file) format]] [data format: PIR [category: Sequence alignment] [suffixes: .ali, .pir] [url: http://www.bioinformatics.nl/tools/crab_pir.html] [encoding: utf-8] [synopsis: PIR (NBRF) format]] [data format: ALN [category: Sequence alignment] [suffixes: .aln, .clustal, .clustalw, .clustalx] [encoding: utf-8] [synopsis: Clustal ALN format]] [data format: HSSP [category: Sequence alignment] [suffixes: .hssp] [encoding: utf-8] [synopsis: HSSP format]] [data format: Pfam [category: Sequence alignment] [suffixes: .selex, .slx, .pfam] [encoding: utf-8] [synopsis: Selex (Pfam) format]] [data format: RSF [category: Sequence alignment] [suffixes: .rsf] [encoding: utf-8] [synopsis: GCG RSF format]] [data format: Stockholm [category: Sequence alignment] [suffixes: .sth, .sto] [url: https://en.wikipedia.org/wiki/Stockholm_format] [encoding: utf-8] [synopsis: Stockholm format]]
Toolshed: InstalledBundleCache.load: package ChimeraX-AlignmentMatrices 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-AlignmentMatrices (installed) [version: 1.0] [api package: chimerax.seqalign.sim_matrices] [category: Sequence alignment]
Toolshed: InstalledBundleCache.load: package ChimeraX-AlignmentHdrs 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-AlignmentHdrs (installed) [version: 1.0] [api package: chimerax.seqalign.headers] [category: Sequence]
Toolshed: InstalledBundleCache.load: package ChimeraX-AlignmentAlgorithms 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-AlignmentAlgorithms (installed) [version: 1.0] [api package: chimerax.seqalign.align_algs] [category: Sequence alignment]
Toolshed: InstalledBundleCache.load: package ChimeraX-AddH 1.0
Toolshed: InstalledBundleCache.load: bundle ChimeraX-AddH (installed) [version: 1.0] [api package: chimerax.atomic.addh] [category: Structure Editing] [command: addh [categories: Structure Editing] [synopsis: Add hydrogens]]
Toolshed: InstalledBundleCache.load: package chardet 3.0.4
Toolshed: InstalledBundleCache._make_bundle_info: no ChimeraX bundle in chardet 3.0.4
Toolshed: InstalledBundleCache.load: package certifi 2019.9.11
Toolshed: InstalledBundleCache._make_bundle_info: no ChimeraX bundle in certifi 2019.9.11
Toolshed: InstalledBundleCache.load: package blockdiag 1.5.4
Toolshed: InstalledBundleCache._make_bundle_info: no ChimeraX bundle in blockdiag 1.5.4
Toolshed: InstalledBundleCache.load: package backcall 0.1.0
Toolshed: InstalledBundleCache._make_bundle_info: no ChimeraX bundle in backcall 0.1.0
Toolshed: InstalledBundleCache.load: package Babel 2.7.0
Toolshed: InstalledBundleCache._make_bundle_info: no ChimeraX bundle in Babel 2.7.0
Toolshed: InstalledBundleCache.load: package appdirs 1.4.3
Toolshed: InstalledBundleCache._make_bundle_info: no ChimeraX bundle in appdirs 1.4.3
Toolshed: InstalledBundleCache.load: package alabaster 0.7.12
Toolshed: InstalledBundleCache._make_bundle_info: no ChimeraX bundle in alabaster 0.7.12
Toolshed: InstalledBundleCache.load: write_cache
Toolshed: InstalledBundleCache._write_cache C:\Users\tic20\AppData\Local\UCSF\ChimeraX\Cache\0.91\toolshed\bundle_info.cache
Toolshed: deregister_command nucleotides
Toolshed: deregister_command ~nucleotides
Toolshed: deregister_command matchmaker
Toolshed: deregister_command mmaker
Toolshed: deregister_command viewdockx
Toolshed: deregister_command viewdockx down
Toolshed: deregister_command viewdockx up
Toolshed: deregister_command color electrostatic
Toolshed: deregister_command color sample
Toolshed: deregister_command color gradient
Toolshed: deregister_command color radial
Toolshed: deregister_command color cylindrical
Toolshed: deregister_command color height
Toolshed: deregister_command surface
Toolshed: deregister_command ~surface
Toolshed: deregister_command volume splitbyzone
Toolshed: deregister_command sop
Toolshed: deregister_command measure sasa
Toolshed: deregister_command measure volume
Toolshed: deregister_command measure area
Toolshed: deregister_command blastprotein
Toolshed: deregister_command blastpdb
Toolshed: deregister_command crosslinks
Toolshed: deregister_command fitmap
Toolshed: deregister_command bumps
Toolshed: deregister_command cbumps
Toolshed: deregister_command modeller comparative
Toolshed: deregister_command modeller scores
Toolshed: deregister_command addh
Toolshed: deregister_command vseries
Toolshed: deregister_command measure motion
Toolshed: deregister_command volume mask
Toolshed: deregister_command volume onesmask
Toolshed: deregister_command cage
Toolshed: deregister_command resfit
Toolshed: deregister_command registration status
Toolshed: deregister_command hbonds
Toolshed: deregister_command ~hbonds
Toolshed: deregister_command swapaa mousemode
Toolshed: deregister_command ks
Toolshed: deregister_command interfaces
Toolshed: deregister_command mseries
Toolshed: deregister_command ui functionkey
Toolshed: deregister_command functionkey
Toolshed: deregister_command name
Toolshed: deregister_command name frozen
Toolshed: deregister_command name delete
Toolshed: deregister_command name list
Toolshed: deregister_command clashes
Toolshed: deregister_command contacts
Toolshed: deregister_command ~clashes
Toolshed: deregister_command ~contacts
Toolshed: deregister_command buttonpanel
Toolshed: deregister_command torsion
Toolshed: deregister_command marker
Toolshed: deregister_command isolde
Toolshed: deregister_command rama
Toolshed: deregister_command rota
Toolshed: deregister_command ~rama
Toolshed: deregister_command ~rota
Toolshed: deregister_command echo
Toolshed: deregister_command log
Toolshed: deregister_command zone
Toolshed: deregister_command 2dlabels
Toolshed: deregister_command label
Toolshed: deregister_command ~label
Toolshed: deregister_command measure blob
Toolshed: deregister_command swapaa
Toolshed: deregister_command sequence
Toolshed: deregister_command volume
Toolshed: deregister_command vop
Toolshed: deregister_command molmap
Toolshed: deregister_command measure mapstats
Toolshed: deregister_command volume erase
Toolshed: deregister_command help
Toolshed: deregister_command distance
Toolshed: deregister_command ~distance
Toolshed: deregister_command alias
Toolshed: deregister_command alias list
Toolshed: deregister_command alias delete
Toolshed: deregister_command ~alias
Toolshed: deregister_command align
Toolshed: deregister_command camera
Toolshed: deregister_command cartoon
Toolshed: deregister_command ~cartoon
Toolshed: deregister_command cd
Toolshed: deregister_command clip
Toolshed: deregister_command ~clip
Toolshed: deregister_command close
Toolshed: deregister_command cofr
Toolshed: deregister_command ~cofr
Toolshed: deregister_command color
Toolshed: deregister_command colour
Toolshed: deregister_command color delete
Toolshed: deregister_command color list
Toolshed: deregister_command color name
Toolshed: deregister_command color show
Toolshed: deregister_command colordef
Toolshed: deregister_command ~colordef
Toolshed: deregister_command colourdef
Toolshed: deregister_command ~colourdef
Toolshed: deregister_command coordset
Toolshed: deregister_command crossfade
Toolshed: deregister_command delete
Toolshed: deregister_command dssp
Toolshed: deregister_command exit
Toolshed: deregister_command quit
Toolshed: deregister_command graphics
Toolshed: deregister_command hide
Toolshed: deregister_command ~show
Toolshed: deregister_command ~display
Toolshed: deregister_command lighting
Toolshed: deregister_command lighting model
Toolshed: deregister_command material
Toolshed: deregister_command measure buriedarea
Toolshed: deregister_command measure center
Toolshed: deregister_command measure convexity
Toolshed: deregister_command measure inertia
Toolshed: deregister_command measure length
Toolshed: deregister_command measure symmetry
Toolshed: deregister_command move
Toolshed: deregister_command palette
Toolshed: deregister_command pdbimages
Toolshed: deregister_command perframe
Toolshed: deregister_command ~perframe
Toolshed: deregister_command pwd
Toolshed: deregister_command rainbow
Toolshed: deregister_command rename
Toolshed: deregister_command roll
Toolshed: deregister_command runscript
Toolshed: deregister_command select
Toolshed: deregister_command ~select
Toolshed: deregister_command set
Toolshed: deregister_command ~set
Toolshed: deregister_command setattr
Toolshed: deregister_command show
Toolshed: deregister_command display
Toolshed: deregister_command size
Toolshed: deregister_command split
Toolshed: deregister_command stop
Toolshed: deregister_command style
Toolshed: deregister_command sym
Toolshed: deregister_command tile
Toolshed: deregister_command time
Toolshed: deregister_command transparency
Toolshed: deregister_command turn
Toolshed: deregister_command undo
Toolshed: deregister_command redo
Toolshed: deregister_command usage
Toolshed: deregister_command version
Toolshed: deregister_command view
Toolshed: deregister_command wait
Toolshed: deregister_command windowsize
Toolshed: deregister_command select zone
Toolshed: deregister_command zoom
Toolshed: deregister_command ui
Toolshed: deregister_command struts
Toolshed: deregister_command remotecontrol xmlrpc
Toolshed: deregister_command smoothlines
Toolshed: deregister_command info
Toolshed: deregister_command debug test
Toolshed: deregister_command debug exectest
Toolshed: deregister_command debug expectfail
Toolshed: deregister_command mlp
Toolshed: deregister_command ui mousemode
Toolshed: deregister_command mousemode
Toolshed: deregister_command device snav
Toolshed: deregister_command ribbon
Toolshed: deregister_command ribbon hide
Toolshed: deregister_command ~ribbon
Toolshed: deregister_command getcrd
Toolshed: deregister_command debug dumpspec
Toolshed: deregister_command device realsense
Toolshed: deregister_command movie
Toolshed: deregister_command texture
Toolshed: deregister_command remotecontrol rest
Toolshed: deregister_command morph
Toolshed: deregister_command meeting
Toolshed: deregister_command preset
Toolshed: deregister_command vr
Toolshed: deregister_command device vr
Toolshed: register bundle ChimeraX-Core 0.91
Toolshed: register bundle ChimeraX-MouseModes 1.0
Toolshed: delay_registration ui mousemode
Toolshed: delay_registration mousemode
Toolshed: register bundle ChimeraX-MapData 1.0
Toolshed: register bundle ChimeraX-ExperimentalCommands 1.0
Toolshed: delay_registration ribbon
Toolshed: delay_registration ribbon hide
Toolshed: delay_registration ~ribbon
Toolshed: delay_registration getcrd
Toolshed: delay_registration debug dumpspec
Toolshed: register bundle ChimeraX-RealSense 1.0
Toolshed: delay_registration device realsense
Toolshed: register bundle ChimeraX-Movie 1.0
Toolshed: delay_registration movie
Toolshed: register bundle ChimeraX-Texture 1.0
Toolshed: delay_registration texture
Toolshed: register bundle ChimeraX-gltf 1.0
Toolshed: register_file_type glTF
Toolshed: register bundle ChimeraX-Crystal 1.0
Toolshed: register bundle ChimeraX-Test 1.0
Toolshed: delay_registration debug test
Toolshed: delay_registration debug exectest
Toolshed: delay_registration debug expectfail
Toolshed: register bundle ChimeraX-List-Info 0.1
Toolshed: delay_registration info
Toolshed: register bundle ChimeraX-WavefrontOBJ 1.0
Toolshed: register_file_type Wavefront OBJ
Toolshed: register bundle ChimeraX-SpaceNavigator 1.0
Toolshed: delay_registration device snav
Toolshed: register bundle ChimeraX-RemoteControl 1.0
Toolshed: delay_registration remotecontrol xmlrpc
Toolshed: register bundle ChimeraX-Dicom 1.0
Toolshed: register bundle ChimeraX-Storm 1.0
Toolshed: register_file_type STORM
Toolshed: register bundle ChimeraX-Scheme-Mgr 1.0
Toolshed: register bundle ChimeraX-Segment 1.0
Toolshed: register bundle ChimeraX-MLP 1.0
Toolshed: delay_registration mlp
Toolshed: register bundle ChimeraX-SmoothLines 1.0
Toolshed: delay_registration smoothlines
Toolshed: register bundle ChimeraX-Morph 1.0
Toolshed: delay_registration morph
Toolshed: register bundle ChimeraX-RotamerLibs-Richardson 1.0
Toolshed: register bundle ChimeraX-STL 1.0
Toolshed: register_file_type StereoLithography
Toolshed: register bundle ChimeraX-RestServer 0.1
Toolshed: delay_registration remotecontrol rest
Toolshed: register bundle ChimeraX-Meeting 1.0
Toolshed: delay_registration meeting
Toolshed: register bundle ChimeraX-CellPack 1.0
Toolshed: register_file_type cellpack
Toolshed: register bundle ChimeraX-Atomic 1.0
Toolshed: register bundle ChimeraX-Rotamer-Lib-Mgr 1.0
Toolshed: register bundle ChimeraX-Struts 1.0
Toolshed: delay_registration struts
Toolshed: register bundle ChimeraX-WebServices 1.0
Toolshed: register bundle ChimeraX-RotamerLibs-Dynameomics 1.0
Toolshed: register bundle ChimeraX-Preset-Mgr 1.0
Toolshed: delay_registration preset
Toolshed: register bundle ChimeraX-VTK 1.0
Toolshed: register_file_type VTK PolyData
Toolshed: register bundle ChimeraX-Vive 1.0
Toolshed: delay_registration vr
Toolshed: delay_registration device vr
Toolshed: register bundle ChimeraX-ColorGlobe 1.0
Toolshed: register_file_type Directional FSC
Toolshed: register bundle ChimeraX-RotamerLibs-Dunbrack 1.0
Toolshed: register bundle ChimeraX-Dssp 1.0
Toolshed: register bundle ChimeraX-PDB 1.0
Toolshed: register_file_type PDB
Toolshed: register bundle ChimeraX-MD-crds 1.0
Toolshed: register_file_type Gromacs full-precision coordinates
Toolshed: register_file_type Gromacs compressed coordinates
Toolshed: register_file_type DCD coordinates
Toolshed: register bundle ChimeraX-Atom-Search 1.0
Toolshed: register bundle ChimeraX-Clipper 0.9.11
Toolshed: delay_registration clipper
Toolshed: delay_registration cview
Toolshed: register_file_type Structure factor MTZ
Toolshed: register bundle ChimeraX-Read-Pbonds 1.0
Toolshed: register_file_type Pseudobonds
Toolshed: register bundle ChimeraX-ChemGroup 1.0
Toolshed: register bundle ChimeraX-UI 1.0
Toolshed: delay_registration ui
Toolshed: register bundle ChimeraX-Std-Commands 1.0
Toolshed: delay_registration alias
Toolshed: delay_registration alias list
Toolshed: delay_registration alias delete
Toolshed: delay_registration ~alias
Toolshed: delay_registration align
Toolshed: delay_registration camera
Toolshed: delay_registration cartoon
Toolshed: delay_registration ~cartoon
Toolshed: delay_registration cd
Toolshed: delay_registration clip
Toolshed: delay_registration ~clip
Toolshed: delay_registration close
Toolshed: delay_registration cofr
Toolshed: delay_registration ~cofr
Toolshed: delay_registration color
Toolshed: delay_registration colour
Toolshed: delay_registration color delete
Toolshed: delay_registration color list
Toolshed: delay_registration color name
Toolshed: delay_registration color show
Toolshed: delay_registration colordef
Toolshed: delay_registration ~colordef
Toolshed: delay_registration colourdef
Toolshed: delay_registration ~colourdef
Toolshed: delay_registration coordset
Toolshed: delay_registration crossfade
Toolshed: delay_registration delete
Toolshed: delay_registration dssp
Toolshed: delay_registration exit
Toolshed: delay_registration quit
Toolshed: delay_registration graphics
Toolshed: delay_registration hide
Toolshed: delay_registration ~show
Toolshed: delay_registration ~display
Toolshed: delay_registration lighting
Toolshed: delay_registration lighting model
Toolshed: delay_registration material
Toolshed: delay_registration measure buriedarea
Toolshed: delay_registration measure center
Toolshed: delay_registration measure convexity
Toolshed: delay_registration measure inertia
Toolshed: delay_registration measure length
Toolshed: delay_registration measure symmetry
Toolshed: delay_registration move
Toolshed: delay_registration palette
Toolshed: delay_registration pdbimages
Toolshed: delay_registration perframe
Toolshed: delay_registration ~perframe
Toolshed: delay_registration pwd
Toolshed: delay_registration rainbow
Toolshed: delay_registration rename
Toolshed: delay_registration roll
Toolshed: delay_registration runscript
Toolshed: delay_registration select
Toolshed: delay_registration ~select
Toolshed: delay_registration set
Toolshed: delay_registration ~set
Toolshed: delay_registration setattr
Toolshed: delay_registration show
Toolshed: delay_registration display
Toolshed: delay_registration size
Toolshed: delay_registration split
Toolshed: delay_registration stop
Toolshed: delay_registration style
Toolshed: delay_registration sym
Toolshed: delay_registration tile
Toolshed: delay_registration time
Toolshed: delay_registration transparency
Toolshed: delay_registration turn
Toolshed: delay_registration undo
Toolshed: delay_registration redo
Toolshed: delay_registration usage
Toolshed: delay_registration version
Toolshed: delay_registration view
Toolshed: delay_registration wait
Toolshed: delay_registration windowsize
Toolshed: delay_registration select zone
Toolshed: delay_registration zoom
Toolshed: register bundle ChimeraX-Dist-Monitor 1.0
Toolshed: delay_registration distance
Toolshed: delay_registration ~distance
Toolshed: register bundle ChimeraX-Contacts 1.0
Toolshed: delay_registration interfaces
Toolshed: register bundle ChimeraX-Clashes 1.0
Toolshed: delay_registration clashes
Toolshed: delay_registration contacts
Toolshed: delay_registration ~clashes
Toolshed: delay_registration ~contacts
Toolshed: register bundle ChimeraX-ISOLDE 1.0b3.dev7
Toolshed: delay_registration isolde
Toolshed: delay_registration rama
Toolshed: delay_registration rota
Toolshed: delay_registration ~rama
Toolshed: delay_registration ~rota
Toolshed: register bundle ChimeraX-Shortcuts 1.0
Toolshed: delay_registration ks
Toolshed: register bundle ChimeraX-ButtonPanel 1.0
Toolshed: delay_registration buttonpanel
Toolshed: register bundle ChimeraX-TapeMeasure 1.0
Toolshed: register bundle ChimeraX-Segger 1.0
Toolshed: register bundle ChimeraX-mmCIF 1.1
Toolshed: register_file_type mmCIF
Toolshed: register bundle ChimeraX-MMTF 1.0
Toolshed: register_file_type MMTF
Toolshed: register bundle ChimeraX-Zone 1.0
Toolshed: delay_registration zone
Toolshed: register bundle ChimeraX-Markers 1.0
Toolshed: delay_registration marker
Toolshed: register_file_type Marker model
Toolshed: register bundle ChimeraX-FileHistory 1.0
Toolshed: register bundle ChimeraX-BondRot 1.0
Toolshed: delay_registration torsion
Toolshed: register bundle ChimeraX-ResidueFit 1.0
Toolshed: delay_registration resfit
Toolshed: register bundle ChimeraX-Connect-Structure 1.0
Toolshed: register bundle ChimeraX-SwapRes 1.0
Toolshed: delay_registration swapaa
Toolshed: register bundle ChimeraX-Mol2 1.0
Toolshed: register_file_type Sybyl Mol2
Toolshed: register bundle ChimeraX-BasicActions 0.1
Toolshed: delay_registration name
Toolshed: delay_registration name frozen
Toolshed: delay_registration name delete
Toolshed: delay_registration name list
Toolshed: register bundle ChimeraX-Bug-Reporter 1.0
Toolshed: register bundle ChimeraX-Dist-UI 1.0
Toolshed: register bundle ChimeraX-SwapAA 1.0
Toolshed: delay_registration swapaa mousemode
Toolshed: register bundle ChimeraX-ModelSeries 1.0
Toolshed: delay_registration mseries
Toolshed: register bundle ChimeraX-Log 1.0
Toolshed: delay_registration echo
Toolshed: delay_registration log
Toolshed: register bundle ChimeraX-Hbonds 1.0
Toolshed: delay_registration hbonds
Toolshed: delay_registration ~hbonds
Toolshed: register bundle ChimeraX-ShowAttr 1.0
Toolshed: register bundle ChimeraX-Label 1.0
Toolshed: delay_registration 2dlabels
Toolshed: delay_registration label
Toolshed: delay_registration ~label
Toolshed: register bundle ChimeraX-ModelPanel 1.0
Toolshed: register bundle ChimeraX-Tug 1.0
Toolshed: register bundle ChimeraX-FunctionKey 1.0
Toolshed: delay_registration ui functionkey
Toolshed: delay_registration functionkey
Toolshed: register bundle ChimeraX-MapEraser 1.0
Toolshed: delay_registration volume erase
Toolshed: register bundle ChimeraX-SideView 1.0
Toolshed: register bundle ChimeraX-Alignments 1.0
Toolshed: delay_registration sequence
Toolshed: register_file_type FASTA
Toolshed: register_file_type MSF
Toolshed: register_file_type PIR
Toolshed: register_file_type ALN
Toolshed: register_file_type HSSP
Toolshed: register_file_type Pfam
Toolshed: register_file_type RSF
Toolshed: register_file_type Stockholm
Toolshed: register bundle ChimeraX-CommandLine 1.0
Toolshed: register bundle ChimeraX-Registration 0.1
Toolshed: delay_registration registration status
Toolshed: register bundle ChimeraX-Shell 1.0
Toolshed: register bundle ChimeraX-Map 1.0
Toolshed: delay_registration volume
Toolshed: delay_registration vop
Toolshed: delay_registration molmap
Toolshed: delay_registration measure mapstats
Toolshed: register bundle ChimeraX-Help 0.9a1
Toolshed: delay_registration help
Toolshed: register_file_type HTML
Toolshed: register bundle ChimeraX-PickBlobs 1.0
Toolshed: delay_registration measure blob
Toolshed: register bundle ChimeraX-VolumeMenu 1.0
Toolshed: register bundle ChimeraX-Cage-Builder 1.0
Toolshed: delay_registration cage
Toolshed: register bundle ChimeraX-MapSeries 1.0
Toolshed: delay_registration vseries
Toolshed: delay_registration measure motion
Toolshed: register bundle ChimeraX-Crosslinks 1.0
Toolshed: delay_registration crosslinks
Toolshed: register bundle ChimeraX-IHM 1.0
Toolshed: register_file_type IHM
Toolshed: register bundle ChimeraX-AlignmentHdrs 1.0
Toolshed: register bundle ChimeraX-Mask 1.0
Toolshed: delay_registration volume mask
Toolshed: delay_registration volume onesmask
Toolshed: register bundle ChimeraX-Modeller 1.0
Toolshed: delay_registration modeller comparative
Toolshed: delay_registration modeller scores
Toolshed: register bundle ChimeraX-Surface 1.0
Toolshed: delay_registration color electrostatic
Toolshed: delay_registration color sample
Toolshed: delay_registration color gradient
Toolshed: delay_registration color radial
Toolshed: delay_registration color cylindrical
Toolshed: delay_registration color height
Toolshed: delay_registration surface
Toolshed: delay_registration ~surface
Toolshed: delay_registration volume splitbyzone
Toolshed: delay_registration sop
Toolshed: delay_registration measure sasa
Toolshed: delay_registration measure volume
Toolshed: delay_registration measure area
Toolshed: register_file_type Collada
Toolshed: register bundle ChimeraX-AlignmentMatrices 1.0
Toolshed: register bundle ChimeraX-MapFit 1.0
Toolshed: delay_registration fitmap
Toolshed: register bundle ChimeraX-Toolbar 0.1
Toolshed: register bundle ChimeraX-AddH 1.0
Toolshed: delay_registration addh
Toolshed: register bundle ChimeraX-MapFilter 1.0
Toolshed: register bundle ChimeraX-BlastProtein 0.1
Toolshed: delay_registration blastprotein
Toolshed: delay_registration blastpdb
Toolshed: register bundle ChimeraX-AlignmentAlgorithms 1.0
Toolshed: register bundle ChimeraX-uniprot 1.0
Toolshed: register_file_type UniProt
Toolshed: register bundle ChimeraX-Bumps 1.0
Toolshed: delay_registration bumps
Toolshed: delay_registration cbumps
Toolshed: register bundle ChimeraX-ViewDockX 0.1
Toolshed: delay_registration viewdockx
Toolshed: delay_registration viewdockx down
Toolshed: delay_registration viewdockx up
Toolshed: register_file_type mol2
Toolshed: register_file_type pdbqt
Toolshed: register bundle ChimeraX-MatchMaker 1.0
Toolshed: delay_registration matchmaker
Toolshed: delay_registration mmaker
Toolshed: register bundle ChimeraX-Nucleotides 0.1
Toolshed: delay_registration nucleotides
Toolshed: delay_registration ~nucleotides
Toolshed: register bundle ChimeraX-BILD 0.1
Toolshed: register_file_type BILD
Toolshed: register bundle ChimeraX-SeqView 1.0
Toolshed: find_bundle ChimeraX-Clipper True 0.9.11
Toolshed: find_bundle ChimeraX-Clipper True 0.9.11