ChimeraX Log

Startup Messages
warning	Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle

UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX

open 2wgj format mmcif fromDatabase pdb

2wgj title:
X-ray Structure of PF-02341066 bound to the kinase domain of c-Met [more info...]

Chain information for 2wgj #1
Chain	Description	UniProt
A	HEPATOCYTE GROWTH FACTOR RECEPTOR	MET_HUMAN 1051-1348

Non-standard residues in 2wgj #1
VGH — 3-[(1R)-1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-(1-piperidin-4-yl-1H-pyrazol-4-yl)pyridin-2-amine (crizotinib)

ui tool show "Color Actions"

No target buttons for the coloring action are checked

Failed to send bug report. Error while sending follows:

Traceback (most recent call last):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/bug_reporter/bug_reporter_gui.py", line 245, in submit
errcode, errmsg, headers, body = post_multipart_formdata(BUG_HOST, BUG_SELECTOR, fields, timeout=10)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/webservices/post_form.py", line 40, in post_multipart_formdata
h.request('POST', url, body=body, headers=headers)
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", line 1282, in request
self._send_request(method, url, body, headers, encode_chunked)
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", line 1328, in _send_request
self.endheaders(body, encode_chunked=encode_chunked)
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", line 1277, in endheaders
self._send_output(message_body, encode_chunked=encode_chunked)
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", line 1037, in _send_output
self.send(msg)
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", line 975, in send
self.connect()
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/http/client.py", line 941, in connect
self.sock = self._create_connection(
^^^^^^^^^^^^^^^^^^^^^^^^
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/socket.py", line 851, in create_connection
raise exceptions[0]
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/socket.py", line 836, in create_connection
sock.connect(sa)
ConnectionRefusedError: [Errno 61] Connection refused