[Chimera-users] Select close residues by name

[Marco Sette]

Thanks Elaine,

Best,

Marco

Il 23/03/2023 16:44, Elaine Meng ha scritto:
> Hi Marco,
> You can use the main Chimera menu: Select... Sequence.  However, there is no command.
>
> With the dialog opened from the menu, youcan enter the exact sequence, such as KAYFPG, or a Prosite pattern as explained here:
>
> <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/findseq.html>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>> On Mar 23, 2023, at 3:57 AM, Marco Sette via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
>>
>> Dear all,
>>
>> I have a series of pdb files and I would select particular regions that contain specific residues, for example KAYFPG, of which I do not know the exact position in the sequence.
>> Actually I open the sequence window and search for the sequence but this is time consuming if you have multiple pdb. Is there a command to shorten this search?
>> Using the select command seems not possible as I can select all residues of a particular amino acid and not neighbour residues by name.
>> Thanks for your help,
>> Best
>> Marco

-- 
Dr Marco Sette, PhD.
Department of Chemical Sciences and Technology
University of Rome, "Tor Vergata"
via della Ricerca Scientifica, 00133, Rome, Italy
e-mail: sette at uniroma2.it
Tel.: +39-0672594424


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