[Chimera-users] how to save molmap by command line

Guido Leoni guido.leoni at gmail.com
Mon Jan 23 01:06:51 PST 2023


Dear list
I would use in programmatic way chimera to elaborate a molmap of a peptide
bound in a receptor.
I'm able to load the pdb and elaborate the molmap of the peptide

"/home/guido/.local/UCSF-Chimera64-1.16/bin/chimera --nogui load <NAMEFILE>
molmap :.P 5;"

Now I would save the molmap of the peptide to do a fitmap vs another
peptide.
I tried
save test.mrc

but the following msg is prompted to me
Volume data sets

molmap <namefile>.pdb res 5

were not saved in the session.  To have them included
in the session they must be saved in separate volume
files before the session is saved.

DO you have any tips?

Thank you
Guido
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