[Chimera-users] AlphaFold Modeling

[S.M. RAIHAN RAHMAN]

Thank you for the clarification.

Regards,
Raihan

On Mon, 31 Oct 2022 at 13:31, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Raihan,
> If you are using Chimera, it does not have AlphaFold prediction.  Chimera
> has Modeller comparative modeling (based on template structure) with
> default number of models = 5, but you can change that in the "Advanced
> Options" on the Modeller comparative modeling tool: in that section, juist
> change the "Number of output models" value.
> <
> https://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/multalignviewer/modeller.html#comparative
> >
>
> If you are using ChimeraX, it has both Modeller Comparative Modeling, and
> AlphaFold prediction.  However, the Alphafold prediction only gives you one
> model.   If you are using ChimeraX, it is better to send your question to
> the address chimerax-users at cgl.ucsf.edu ... either way please be clear
> about which program and which tool you are using.  Thanks!
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
>
>
> > On Oct 31, 2022, at 1:09 PM, S.M. RAIHAN RAHMAN via Chimera-users <
> chimera-users at cgl.ucsf.edu> wrote:
> >
> > Hi!
> > Good Afternoon. I hope that you are doing well. I am facing a problem in
> running structure prediction of large protein sequence. Is there any way of
> predicting only 2 models of a given sequence in lieu of 5 models? Please
> let me know. Thank you.
> >
> > Regards,
> > Raihan
>
>
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