[Chimera-users] Finding disulphide bonds

[Prathvi Singh]

Thanks a lot Eric for the help :-)

On Mon, Nov 7, 2022 at 10:45 PM Eric Pettersen <pett at cgl.ucsf.edu> wrote:

> Hi Prathvi,
> Assuming that 'm' is your protein model, then the code would be:
>
> from ChemGroup import findGroup
> disulfides = findGroup("disulfide", [m])
> num_disulfides = len(disulfides)
>
> --Eric
>
> Eric Pettersen
> UCSF Computer Graphics Lab
>
>
> On Nov 7, 2022, at 12:32 AM, Prathvi Singh via Chimera-users <
> chimera-users at cgl.ucsf.edu> wrote:
>
> Hi Elaine,
>
> I have found out a way to select the disulphide bonded CYS residues in
> UCSF chimera using the command: *select disulphide*.
>
> However, is there a way to count the number of disulphide bridges in a
> protein and save in a variable?
>
> --
> Prathvi Singh,
> Research Fellow,
> Department of Biological Sciences & Bioengineering,
> Indian Institute of Technology, Kanpur-208016
> _______________________________________________
> Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
> Manage subscription:
> https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users
>
>
>

-- 
Prathvi Singh,
Research Fellow,
Department of Biological Sciences & Bioengineering,
Indian Institute of Technology, Kanpur-208016
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.rbvi.ucsf.edu/pipermail/chimera-users/attachments/20221108/ec53b0fb/attachment.html>