[Chimera-users] report rotate and shift value in MatchMaker

[Yanhe Zhao]

Dear Elaine,

It's my fault: the fourth column is the shift value after rotation, and the
value along axis (for example the axis is z) was reported. What is shift
value in another two dimensions? And the three row means three iteration?

Thanks and cheers,
Yanhe

Elaine Meng <meng at cgl.ucsf.edu> 于2022年1月5日周三 11:46写道：

> Hi Yanhe,
> At least for me, it does give both the shift and rotation.  The shift is
> the last part. For example, I used matchmaker to superimpose 2gbp and 2fw0
> and then "measure rotation" gives this in the Log:
>
> Position of 2gbp (#0) relative to 2fw0 (#1) coordinates:
>   Matrix rotation and translation
>     -0.33209740  -0.83501915  -0.43869618  55.73384197
>     -0.20519447   0.51790962  -0.83046063  20.74214411
>      0.92065550  -0.18577579  -0.34333775 -49.60904344
>   Axis   0.39527163  -0.83345089   0.38616052
>   Axis point  46.43348863   0.00000000  -0.96285927
>   Rotation angle (degrees) 125.36356888
>   Shift along axis -14.41460560
>
> Best,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
> > On Jan 5, 2022, at 9:36 AM, Yanhe Zhao via Chimera-users <
> chimera-users at cgl.ucsf.edu> wrote:
> >
> > Dear Elaine,
> >
> > Thanks a lot. It is so helpful. I try command ' measure rotation #17
> #13', the rotation value was reported, but no shift value, should I add
> more option?
> >
> > Thanks and cheers,
> > Yanhe
> >
> > Elaine Meng <meng at cgl.ucsf.edu> 于2022年1月5日周三 11:20写道：
> > Hi Yanhe,
> > Happy New Year!
> >
> > To get the rotate/shift of one model compared to another after they have
> been moved separately (such as by using Matchmaker), you can use the
> Chimera "measure rotation" command.
> >
> > See <
> https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/measure.html#rotation
> >
> >
> > ChimeraX also has both of these features, Matchmaker and the "measure
> rotation" command, although the details of how to use them are slightly
> different.
> >
> > I hope this helps,
> > Elaine
> > -----
> > Elaine C. Meng, Ph.D.
> > UCSF Chimera(X) team
> > Department of Pharmaceutical Chemistry
> > University of California, San Francisco
> >
> >
> > > On Jan 5, 2022, at 8:04 AM, Yanhe Zhao via Chimera-users <
> chimera-users at cgl.ucsf.edu> wrote:
> > >
> > > Greeting there,
> > >
> > > Happy New Year!
> > >
> > > How can find the rotate and shift value after I done the 'MatchMaker'
> in Chimera?
> > >
> > > Thanks and regards,
> > > Yanhe
> >
> > _______________________________________________
> > Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
> > Manage subscription:
> https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20220105/2bc1ebcd/attachment.html>