[Chimera-users] Average distance between two non-bonded atoms

Francesco Pietra chiendarret at gmail.com
Thu Feb 24 07:19:00 PST 2022


Hi all
Is it any command to measure the average distance between two non bonded
atoms all over a molecular dynamics trajectory? Ideally linked to examining
the trajectory with Tools ... MD/Ensemble Analysis ... MDmovie (I am using
psf/dcd)
I.e., doing the average of the distance from all frames.

Thanks
francesco pietra
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