[Chimera-users] Question: How to find the area of hydrophobic interaction?

Kenji MATSUI s214903z at st.go.tuat.ac.jp
Mon Dec 5 23:51:18 PST 2022


Dear Chimera

I am sorry to interrupt your busy schedule.

My name is Matsui, and I am a second-year master's student at a Japanese
university.
Thank you for taking time out of your busy schedule to respond to my
question the other day.

We are investigating hydrophobic interactions between protein and ligand.
,but how can I display the following?

distance between faces:show  how many Å2 are within Å of each other.

I found a hydrophobic contact, but does it work well in my case?

https://www.cgl.ucsf.edu/pipermail/chimera-users/2012-February/007236.html

Please confirm.

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Kenji Matsui
 Graduate School of Tokyo University of Agriculture and Technology M2
2-24-16, Nakamachi, Koganei-shi, Tokyo 184-8588, Japan
 Mail: s214903z at st.go.tuat.ac.jp
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