[Chimera-users] Make a new pdb model from a part of pdb file

[C.J.]

Thank you! It works for me.

Elaine Meng <meng at cgl.ucsf.edu> 于2021年1月3日周日 上午9:26写道：

> Hi Jianhao,
> Just delete the residues you don't want.  E.g. if  the residues are
> numbered 1-1000 and you don't want 501-1000, then command:
>
> delete :501-1000.a
>
> ... of course, you can use any command-line atom specification, e.g.
> selecting that part and then
>
> delete sel
>
> <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/delete.html>
> <
> https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/frameatom_spec.html
> >
>
> If you wanted it as a file, then just save a PDB file after you do the
> deletion.  E.g. menu File... Save PDB, or command "write":
> <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html#pdb>
> <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/write.html>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Jan 2, 2021, at 7:36 PM, C.J. <biocjh at gmail.com> wrote:
> >
> > Hi, I have a pdb with a A chain of 1000 amino acids. How can I make a
> new model with a part of A chain (i.e. 500 amino acids) using command line?
> Thank you!
> >
> > Best,
> > Jianhao
>
>

-- 
Best regards!
C.J.
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