[Chimera-users] Problem Saava9ng merged PDB Files

Stephen P. Molnar s.molnar at sbcglobal.net
Sat Apr 24 05:42:52 PDT 2021


I am using Chimera v-1.14 (build 42094) on my Debian Buster Linux 
computer and have run into a problem saving a pdb file containing two 
pdb files.

The files are attached to this email.This is a portion of the combined 
flies:



The structure of the D21.pdb file isthe ball image.

I followed the instructions in the Building Structures, Modifying and 
Saving Data in the Help pages.

However, when I open DD21Mod1 in LigPlot to identify the docked ligand I 
get:



Clearly, this is not the ligand docked int the active site. I have used 
LigPlot on a number of pdb files with good results and am forced to 
conclude that there is a problem with D21Mod1.pdb.

I would appreciate help in solving this problem.

Thanks in advance.

-- 
Stephen P. Molnar, Ph.D.
www.molecular-modeling.net
614.312.7528 (c)
Skype:  smolnar1

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20210424/61aaa8a6/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Screenshot_2021-04-24_08-29-16.png
Type: image/png
Size: 95187 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20210424/61aaa8a6/attachment-0002.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Screenshot_2021-04-24_08-30-37.png
Type: image/png
Size: 18238 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20210424/61aaa8a6/attachment-0003.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: D21.pdb
Type: chemical/x-pdb
Size: 2043149 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20210424/61aaa8a6/attachment-0003.bin>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: D21Mod1.pdb
Type: chemical/x-pdb
Size: 2029406 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20210424/61aaa8a6/attachment-0004.bin>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Mod1.pdb
Type: chemical/x-pdb
Size: 2040919 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20210424/61aaa8a6/attachment-0005.bin>


More information about the Chimera-users mailing list