[Chimera-users] Vina results

[Marco Sette]

Thanks for the explanations.

I was wondering the rmsd values were different from the values obtained 
by the match command. Now I realise that Vina uses a different approach.

Thanks again,

Marco


Il 09/01/2020 19:29, Conrad Huang ha scritto:
> https://www.researchgate.net/post/What_is_the_importance_rmsd_ub_and_rmsd_lb_in_docking_results 
>
>
> has a good explanation of what they mean.
>
> Conrad
>
> On 1/9/2020 9:54 AM, Marco Sette wrote:
>> Dear all,
>>
>> running the Autodock Vina module returns a list of docked compounds. 
>> The resulting ViewDock table has 2 colums showing RMSD values.
>>
>> What they refer?
>>
>> Thanks for your help,
>>
>> Best regards,
>>
>> Marco
>>
>>
>
-- 
Dr.Marco Sette, Ph.D.
Department of Chemical Sciences and Technology
University of Rome, "Tor Vergata"
via della Ricerca Scientifica, 00133, Rome, Italy
e-mail: sette at uniroma2.it
e-mail: m77it at yahoo.it
Tel.: +39-0672594424
Fax: +39-0672594328
http://stc.uniroma2.it/?page_id=622&cn-entry-slug=marco-sette