[Chimera-users] Biological assembly from the asymmetric unit and using it for MD

David Sáez davidsaez at udec.cl
Tue Feb 25 20:07:26 PST 2020


Hi,

very basic question here. I found ways to generate the tetramer biological
assembly  starting from the monomer asymmetric unit . (Downloading the BA
directly from RCSB and alternatively using the BU function in Chimera's
Model panel). The procedures are equivalent AFAIU.

Now, this generated structure should be a valid starting point for
molecular dynamics simulations? Does anybody have experience with that?.
There are other structures showing the tetramer, but the resolution is too
low.

Thanks!

David.
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