[Chimera-users] Problem during Residue interaction network generation

[Aditya Padhi]

Dear Chimera users,

I am using the StructueViz plugin of Cytoscape to launch Chimera and then
loading the MD trajectory from Gromacs, where I need to generate the
residue interaction network. After this step, when I click "apply" for
displaying the interaction network in Cytoscape, it often shows "Importing
Residue Network from Chimera", sometimes "getting data for attribute
secondarystructure" and sometimes "getting data for attribute ishelix".
Even after I wait for half a day, the message continues to show and I am
not able to work on Cytoscape.
I have even tried to reduce the number of frames of the MD trajectory to
see if that helps, but that doesn't work even.

Can anyone help me to how to resolve this problem?
With best regards
Aditya
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20200219/06f59add/attachment.html>