[Chimera-users] Docking problem in my Protein ligand

[MUHAMMAD FURQAN AKBER]

I also used downloded autodook vina in chimera

On 27 Aug 2020 8:04 p.m., "Elaine Meng" <meng at cgl.ucsf.edu> wrote:

> Dear Muhammad,
> The web service that was used by the "Autodock Vina" tool in Chimera is no
> longer available. To use this tool in Chimera, now you have to download and
> install Autodock Vina on your own computer, as explained in the help page:
> <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/vina/vina.html>
>
> Or, you could use some other docking program or web service (not in
> Chimera). There are many good docking programs developed by other groups,
> including:
>
> Autodock Vina  <http://vina.scripps.edu/>
> DOCK  <http://dock.compbio.ucsf.edu/index.html>
>
> Web services:
>
> Swissdock <http://www.swissdock.ch/>
> Webina <https://durrantlab.pitt.edu/webina/>
> For virtual screening, DOCK Blaster: <https://blaster.docking.org/>
>
> After you do the docking separately from Chimera, you could still use the
> ViewDock tool in Chimera to analyze the output files.
> <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/viewdock/
> framevd.html>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Aug 26, 2020, at 9:12 PM, MUHAMMAD FURQAN AKBER <
> f2018140043 at umt.edu.pk> wrote:
> >
> > Hi hope you are fine?
> > I cant find out the final result by protein ligand docking by chimera.
> This shows the error with pdb receptor.
> > What can i do ?
>
>
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