[Chimera-users] in the docking process this message appear and does not continue, opal:vina_1.1.2 unavailable what i should do

[Ahmed Tawfeek]

 Dear Elaine,
Thank you very much Elaine,
but i could get the interactions and bonds 
could you help me or guide me for another option

waiting your reply
ahmed
     On Thursday, April 30, 2020, 05:11:15 PM GMT+2, Elaine Meng <meng at cgl.ucsf.edu> wrote:  
 
 Sorry, the Autodock Vina web service is no longer available.

This was already discussed on the mailing list 

<http://plato.cgl.ucsf.edu/pipermail/chimera-users/2020-April/016738.html>
<http://plato.cgl.ucsf.edu/pipermail/chimera-users/2020-April/016752.html>

and is also shown on the Help page for this tool:

<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/vina/vina.html>

Somebody on the mailing list mentioned that there is another Autodock Vina web server called Webina 
<https://durrantlab.pitt.edu/webina/>

...that you may be able to use directly (not in Chimera).  I have not tried it myself, but according to others, after you get the output file from Webina you may be able to open and view it with the ViewDock tool in Chimera as described in the second message below:

<http://plato.cgl.ucsf.edu/pipermail/chimera-users/2020-April/016762.html>
<http://plato.cgl.ucsf.edu/pipermail/chimera-users/2020-April/016764.html>

Elaine
-----
Elaine C. Meng, Ph.D.                      
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Apr 30, 2020, at 6:37 AM, Ahmed Tawfeek <ahmed_tawfeek83 at yahoo.com> wrote:
> 
> Dear Professors and Doctors, 
> I need the help
> I am trying to learn the work on chimera for the purpose of checking my compounds as organic chemist but i could not continue, because at the docking stage, the autodock vina does not work and this message appear,
> 
> the message " opal:vina_1.1.2 unavailable"
> 
> what is the solution
> 
> Best Regards
> 
> Ahmed Tawfik  
  
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