[Chimera-users] how to obtain information regarding complexes

[Quadir, Farhan (MU-Student)]

Hello,

I am relatively new to chimera. I am stuck with a problem of how to perform the following from a pdb file which contains multiple chains:


  1.  I would like to find regions which are 5.0 Angstroms or less between selected chains.
  2.  After obtaining that I would like to get from (1) a list of the residues and their positions in the chain that are interacting with each other inter-chainwise.


Regards,


Farhan Quadir


PhD Student and Graduate Research Assistant

Bioinformatics, Data Mining and Machine Learning (DBM) Lab

304 Engineering Building 1

Electrical Engineering and Computer Science (EECS) Department

University of Missouri,

Columbia, MO 65201, USA

Email: fqg7h at mail.missouri.edu

Phone (Cell): 573-846-4047

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