[Chimera-users] Rendering by arbitrary attributes in external file

[Healey, Joe]

Hi chimera team,


I use the Render by Attribute function frequently for models, but to date, I have only ever used it for rendering attributes determined 'internally' by chimera (hydrophobicity, AA conservation from an MSA etc).


Is there a way to render residues by an arbitrary set of parameters?


Imagine for instance, I have a csv that maps a residue number to a value (between 0 and 1). In my case this is antigenicity.


ResNum, Res, Value

1, A, 0.927

2, T, 0.872,

3, W, 0.738

...


Can I read this file in via python/chimera commands and apply these values from an external file?


Many thanks


Joe Healey


M.Sc. B.Sc. (Hons) MRSB
PhD Student
MOAC CDT, Senate House
University of Warwick
Coventry
CV47AL
Mob: +44 (0) 7536 042620  |  Email: J.R.J.Healey at warwick.ac.uk

Jointly working in:
Waterfield Lab<http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/> (WMS Microbiology and Infection Unit)
and the Gibson Lab<http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/> (Warwick Chemistry)

Twitter: @JRJHealey<https://twitter.com/JRJHealey>  |  Website: MOAC Page<http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey> | ORCID: orcid.org/0000-0002-9569-6738
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