[Chimera-users] Errors applying AddCharge to PDB files with non-Chimera protonation

[Eric Pettersen]

> On Sep 12, 2018, at 6:48 AM, Matthias Bal <matthiascbal at gmail.com> wrote:
> 
>  And is there a way to script the conversion to treat files in batches?

Sorry, missed this part.  If you can get the naming issues ironed out, then this web page covers how to script through a set of data files:  https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/basicPrimer.html <https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/basicPrimer.html>

—Eric

	Eric Pettersen
	UCSF Computer Graphics Lab




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