[Chimera-users] max density value using a script

[Elaine Meng]

Hi Tamas,
I think you can see the links using http instead of https:

http://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts/mapdiff.py

http://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts

Best,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Sep 6, 2018, at 8:48 PM, Tamas Hegedus <tamas at hegelab.org> wrote:
> 
> Dear Tom,
> 
> Thanks for the suggestion. However, I can not access these links and I can not find any way to get access those scripts.
> 
> ???
> 
> Thanks, Tamas
> 
> On 09/06/2018 10:45 PM, Tom Goddard wrote:
>> Hi Tamas,
>> 
>> Here is Python code that computes max/min of one map subtracted from another.  It assumes the maps are the same size and aligned.  If they are different sizes or not aligned it will need some different code to do interpolation of one of the maps.
>> 
>> 	https://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts/mapdiff.py
>> 
>> More Chimera Python script examples are at
>> 
>> 	https://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts
>> 
>>   Tom
>> 
>> 
>>> On Sep 6, 2018, at 2:34 AM, Tamas Hegedus wrote:
>>> 
>>> Hi,
>>> 
>>> I subtract two electron density maps and I would like to get the min and max density values of the resulted map. I can see these values in the GUI, but I would like to get them running chimera without a gui using a python script. (Without saving the final map into an .mrc file and reading the header of that file.)
>>> 
>>> Thanks for your help,
>>> Tamas