[Chimera-users] Values at Atom Oositions

Elaine Meng meng at cgl.ucsf.edu
Mon Nov 19 10:28:30 PST 2018


Dear Hernando,
Yes, the command version of “Values at Atom Positions” is “measure Mapvalues”:

<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/measure.html#mapValues>

Then you could use “rangecolor” to color atoms etc. by the attribute values, or specify/select the atoms by attribute value in other commands, etc.

<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/rangecolor.html>
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/atom_spec.html#descriptors>
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/defineattrib/defineattrib.html#attribdef>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Nov 19, 2018, at 5:57 AM, Hernando J Sosa <hernando.sosa at einstein.yu.edu> wrote:
> 
> Dear Chimera,
> Is there a command or a way to use the function "Values at Atom Positions" within a script. 
> Thanks
> Hernando





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