[Chimera-users] How to correct this error: ~/usr/chimera-1.12/lib/libgomp.so.1: version `GOMP_4.0' not found (required by /usr/lib/libopenbabel.so.4)

Francois Berenger mlists at ligand.eu
Tue Nov 13 17:53:40 PST 2018


Hello,

On a Ubuntu 18.04.1 LTS, I get this error message when I start chimera.

Is there a known fix?

Am I running a too old version of chimera or should I run
a version specially compiled for Ubuntu computers?

Here is the full error message:
---
# chimera
Error while importing plipgui from 
/home/berenger/.local/lib/python2.7/site-packages:
Traceback (most recent call last):
   File 
"/home/berenger/usr/chimera-1.12/share/chimera/extension/base.py", line 
349, in _importExtension
     __import__(module)
   File 
"/home/berenger/.local/lib/python2.7/site-packages/plipgui/ChimeraExtension.py", 
line 8, in <module>
     from plipgui.core import cmd_plip, cmd_unplip
   File 
"/home/berenger/.local/lib/python2.7/site-packages/plipgui/core.py", 
line 50, in <module>
     from plip.modules.preparation import PDBComplex
   File 
"/home/berenger/.local/lib/python2.7/site-packages/plip/modules/preparation.py", 
line 13, in <module>
     from .detection import *
   File 
"/home/berenger/.local/lib/python2.7/site-packages/plip/modules/detection.py", 
line 12, in <module>
     from .supplemental import *
   File 
"/home/berenger/.local/lib/python2.7/site-packages/plip/modules/supplemental.py", 
line 26, in <module>
     import pybel
   File "/home/berenger/.local/lib/python2.7/site-packages/pybel.py", 
line 53, in <module>
     import openbabel as ob
   File "/home/berenger/.local/lib/python2.7/site-packages/openbabel.py", 
line 21, in <module>
     _openbabel = swig_import_helper()
   File "/home/berenger/.local/lib/python2.7/site-packages/openbabel.py", 
line 20, in swig_import_helper
     return importlib.import_module('_openbabel')
   File 
"/home/berenger/usr/chimera-1.12/lib/python2.7/importlib/__init__.py", 
line 37, in import_module
     __import__(name)
ImportError: /home/berenger/usr/chimera-1.12/lib/libgomp.so.1: version 
`GOMP_4.0' not found (required by /usr/lib/libopenbabel.so.4)
---

Thanks a lot,
F.




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