[Chimera-users] Automating H bond distance retrieval

[Samuel FreemanFox]

Hi,

I was wondering about the possibility of writing a setup.com file which is capable of opening a receptor.pdb and ligand.pdb file, locating the H-bonds between these two structures and then reporting back the lengths of the bonds?

Currently I am able to open both files, execute addh, addcharge, and hbonds with my setup.com file. However I am unsure of how to proceed from there.

Many thanks and I look forward to your response.

Samuel Freeman-Fox



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