[Chimera-users] Chimera/Modeller to add missing residues

Daipayan Sarkar sdaipayan at gmail.com
Tue Nov 14 02:53:07 PST 2017


Hello Elaine,

I am using Chmiera-Modeller GUI to add the missing residues for my PDB file:
(https://files.rcsb.org/view/1YPH.pdb).

>From the mailing list, I am following the procedure listed in:
http://www.cgl.ucsf.edu/pipermail/chimera-users/2013-September/009174.html

However, once the missing residues for chains A and B are included, I save
the new PDB file using File > Save PDB... > under save models selection
"selected all three files" and clicked OK. The resulting PDB file includes
the original header with additional 'MODEL 1', 'MODEL 2' and 'MODEL 3'. How
to save the atom coordinates as a single PDB file after adding the missing
residues? Any comments/suggestions is appreciated.

Regards,
Daipayan
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