[Chimera-users] working with PDB files from XplorNIH
Miriam Gochin
miriam.gochin at tu.edu
Sun Nov 12 13:37:20 PST 2017
I am wondering if it is possible in Chimera to select between different chains in a multimer that are defined by the SEGID parameter in XPLOR. This appears on columns 77-80 of the PDB file,
e.g. in this homotrimer:
ATOM 1 N GLN 1 -2.276 -27.488 29.307 1.00 0.00 A
...
ATOM 684 N GLY 1 4.365 -26.465 20.200 1.00 0.00 C
---
ATOM 1357 N GLN 1 13.798 -26.207 29.441 1.00 0.00 E
...
Atom selection results in picking up 3 atoms instead of 1, since Chimera expects the chain designation after the residue name. The XPLOR output is therefore not compatible with Chimera input requirements and I am wondering if there is a workaround.
Many thanks for any suggestions.
---------------------------------
Miriam Gochin
Touro University California
miriam.gochin at tu.edu
707-638-5463
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