[Chimera-users] Help with chimera / sfld compatibility

[Anne-Frances Miller]

Hello experts,

I have tried reloading many things and switched browsers.  When I am in SFLD and want to view my aligned sequences of the subgroup identified by my enzyme, in chimera, I get the error message: Error while processing /Users/afm/Desktop/sfld-3.chimerax:
'/var/folders/zg/vzx644v88xl59y001s75rw2h0000gp/T/hmmer_align_fsgWHiJp.sto' is not a Stockholm file

Also
Any ideas?

IOError at /ajax/download_temp/hmmer_align_mZdHMnpU.sto/
[Errno 2] No such file or directory: u'/tmp/sfld/hmmer_align_mZdHMnpU.sto'
Request Method:	GET
Request URL:	http://sfld.rbvi.ucsf.edu/django/ajax/download_temp/hmmer_align_mZdHMnpU.sto/
Django Version:	1.6.8
Exception Type:	IOError
Exception Value:	
[Errno 2] No such file or directory: u'/tmp/sfld/hmmer_align_mZdHMnpU.sto'
Exception Location:	/usr/local/projects/sfld/production/www/sflddjango/apache/../../sflddjango/sfldajax/views.py in download_tempfile, line 61
Python Executable:	/usr/bin/python
Python Version:	2.7.5
Python Path:	
['/usr/local/projects/netgen/production/lib/python/netgen/interface',
 '/usr/local/projects/sfld/production/lib/python/sqlparse-0.1.13-py2.7.egg',
 '/usr/local/projects/sfld/production/lib/python/MySQL_python-1.2.3-py2.7-linux-x86_64.egg',
 '/usr/local/projects/sfld/production/lib/python/django_debug_toolbar-1.2.2-py2.7.egg',
 '/usr/local/projects/sfld/production/lib/python/pycharm-debug.egg',
 '/usr/local/projects/sfld/production/lib/python/Sphinx-1.0.7-py2.7.egg',
 '/usr/local/projects/sfld/production/www/sflddjango/apache/../../../lib/python',
 '/usr/local/projects/sfld/production/www/sflddjango/apache/../..',
 '/usr/lib/python2.7/site-packages/PEAK_Rules-0.5a1.dev_r2713-py2.7.egg',
 '/usr/lib/python2.7/site-packages/Extremes-1.1.1-py2.7.egg',
 '/usr/lib/python2.7/site-packages/AddOns-0.7-py2.7.egg',
 '/usr/lib/python2.7/site-packages/DecoratorTools-1.8-py2.7.egg',
 '/usr/lib/python2.7/site-packages/BytecodeAssembler-0.6-py2.7.egg',
 '/usr/lib/python2.7/site-packages/SymbolType-1.0-py2.7.egg',
 '/usr/lib/python2.7/site-packages/PrivateWikis-1.0.0-py2.7.egg',
 '/usr/lib64/python27.zip',
 '/usr/lib64/python2.7',
 '/usr/lib64/python2.7/plat-linux2',
 '/usr/lib64/python2.7/lib-tk',
 '/usr/lib64/python2.7/lib-old',
 '/usr/lib64/python2.7/lib-dynload',
 '/usr/lib64/python2.7/site-packages',
 '/usr/local/lib64/python2.7/site-packages',
 '/usr/lib64/python2.7/site-packages/gtk-2.0',
 '/usr/lib/python2.7/site-packages',
 '/usr/local/lib/python2.7/site-packages',
 '/usr/local/projects/netgen/production/lib/python']
Server time:	Sat, 11 Nov 2017 08:54:00 -0800


Anne-Frances Miller
Professor of Chemistry
University of Kentucky




-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20171111/da78a8ab/attachment.html>