[Chimera-users] electrostatic surface

[chemocev marker]

Hi
I am calculating the electrostatic surface of the protein that has a
peptide bound inside the catalytic camber. There are two ways to calculate,
either i can split the molecule in indivual chain and calculate their
surface indivdually and run the APBS server for the electrostatic
potential, or i can do it use the surfcat command. Both of them works but
the results are different. To me the results are more logical by splitting
the molecule in indivual chain, but u am not sure if its right to do that
specially when you want to measure the electrostatic potential. What is
your opinion.

best
Jiri
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