[Chimera-users] Add Charges failure (libquadmath)

Subha Kalyaanamoorthy kalyaana at ualberta.ca
Mon Jun 20 10:19:39 PDT 2016


Hi There,

I am trying to run charge calculation using Antechamber in chimera, but
getting an error related to library not found.
_______________________

Running ANTECHAMBER command:
/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/antechamber
-ek qm_theory='AM1', -i
/var/folders/pq/d4fvmdj542gcnqqjbfm554hr0000gt/T/tmpJCy8sw/ante.in.mol2 -fi
mol2 -o
/var/folders/pq/d4fvmdj542gcnqqjbfm554hr0000gt/T/tmpJCy8sw/ante.out.mol2
-fo mol2 -c bcc -nc 1 -j 5 -s 2
(UNK)

(UNK) dyld: Library not loaded: /usr/local/lib/libquadmath.0.dylib

(UNK)   Referenced from:
/Applications/Chimera.app/Contents/Resources/lib/libgfortran.3.dylib

(UNK)   Reason: image not found

(UNK) Running:
/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/bondtype -j
part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac

(UNK)

(UNK) Running:
/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/atomtype -i
ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff

(UNK) Total number of electrons: 302; net charge: 1

(UNK)

(UNK) Running:
/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i
sqm.in -o sqm.out

(UNK) Error: cannot run
"/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i
sqm.in -o sqm.out" of bcc() in charge.c properly, exit

Failure running ANTECHAMBER for residue UNK
Check reply log for details
-----------------------

FYI, I am running on OS X EI Capitan version 10.11.5

Thanks,
Subha
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