[Chimera-users] Inter-molecular H-bonds between water molecules not displayed in per-frame script

George Green soyo.green at gmail.com
Thu May 14 07:42:57 PDT 2015


Hi,

I'm trying to get a per-frame script going which shows the inter-molecular
H-bonds within a protein binding site. It is working in that all H-bonds
show apart from water-water h-bonds. Is there any fix for this at all? My
code is below:

Water molecules are residues :159-162

I would be very grateful for any assistance. :)

sg


################################################
####################
# per-frame H-bond
repr bs :158
color hot pink :158
color byhet :158
#
disp
:60,37,85,112,109,35,158,84,60,40,38,114,69,90,58,61-68,56,21,45,52,101,15,92,40,105,116,24,42,54,40,24,10,97,120,159,160,161,162
disp :WAT
#
select :1-162; hbonds intramodel true intermodel true line 5 color gold ;
~select
select :90

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