[Chimera-users] Reducing the map to a cubic box

[Tom Goddard]

Hi Sushree,

  Why does your "vop boxes” command use model #0 for both the map and the markers?  That can’t be right.  If your marker(s) are in model #1 you would need “vop boxes #0 #1 size 36”.  What are you trying to do?

	http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/vop.html#boxes

  Tom



> On Apr 15, 2015, at 1:03 PM, Sushree Tripathy wrote:
> 
> Hi,
> 
> I went through the chimera user's guide and as per the syntax used  "vop boxes #0 #0 useMarkerSize true" or "vop boxes #0 #0 size 36" (the simplest case) to create a cubic box from my density map (54, 36, 51). It is neither giving me any error nor giving me the output map.
> 
> Please help.
> Thanks
> Sushree.
> 
> 
> Sushree Tripathy
> Graduate Student
> Department of Physics
> University at Buffalo
> _______________________________________________
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20150415/850a6fe9/attachment.html>