[Chimera-users] Proposal to add ability to load CATH domains in Chimera

Tony Lewis t.lewis at ucl.ac.uk
Mon Sep 29 07:27:43 PDT 2014


Dear Chimera people,

Many thanks to all Chimera contributors.

Please may I propose an addition to allow users to access our CATH domains
in the same way that they can currently access SCOP domains (
https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/scop.html )?

PDBs for CATH domains can be loaded from URI's of the form:
http://data.cathdb.info/latest_release/pdb/1cukA01

For information, CATH domain IDs contain 7 digits:

   - 1-4 : (eg 1cuk ) : PDB code
   -   5 : (eg A    ) : chain code
   - 6-7 : (eg 01   ) : 2-digit domain number ( '00' for whole chain
   domains )

We here at CATH would be very happy to provide any other information
required to implement this.

Many thanks for your help.

Kind regards,

Tony

Dr Tony Lewis
Orengo Group
UCL
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