[Chimera-users] display ribbon for CA atoms

Bala subramanian bala.biophysics at gmail.com
Tue Oct 21 02:27:31 PDT 2014


Friends,
I am trying to visualize a helical structure containing only the CA atoms.
Chimera doesnt display ribbon for some of atoms, a reason which i dnt
understand.

I have tried to visualize in several versions 1.10, 1.9, 1.7 etc. I am
pasting the coordinates below of my pdb. You insights would be of great
help to resolve the problem.

MODEL       1
ATOM    240  CA  VAL A  15      -4.028 -10.131 -14.981  1.00  0.00
ATOM    256  CA  ASA A  16      -1.059  -7.963 -15.984  1.00  0.00
ATOM    268  CA  LEU A  17      -1.498  -5.735 -12.905  1.00  0.00
ATOM    287  CA  ALA A  18      -1.837  -8.694 -10.513  1.00  0.00
ATOM    297  CA  VAL A  19       1.521 -10.149 -11.590  1.00  0.00
ATOM    313  CA  ALA A  20       3.129  -6.662 -11.574  1.00  0.00
ATOM    323  CA  VAL A  21       1.979  -5.898  -8.009  1.00  0.00
ATOM    339  CA  VAL A  22       3.318  -9.266  -6.779  1.00  0.00
ATOM    355  CA  ILE  A  23       6.792  -8.806  -8.282  1.00  0.00
ATOM    374  CA  GLY A  24       6.953  -5.077  -7.492  1.00  0.00
ATOM    381  CA  THRA  25       5.978  -5.469  -3.854  1.00  0.00
ATOM    395  CA  ALA A  26       8.113  -8.578  -3.252  1.00  0.00
ATOM    405  CA  AHE A  27      11.502  -6.829  -3.607  1.00  0.00
ATOM    425  CA  THR A  28      10.411  -3.957  -1.319  1.00  0.00
ATOM    439  CA  ALA  A  29       8.727  -6.289   1.217  1.00  0.00
ATOM    449  CA  LEU  A  30      11.626  -8.763   1.549  1.00  0.00
ATOM    468  CA  VAL  A  31      14.332  -6.060   1.884  1.00  0.00
ATOM    484  CA  THR A  32      12.244  -3.984   4.372  1.00  0.00
ATOM    498  CA  LYS  A  33      11.589  -7.104   6.477  1.00  0.00
ATOM    520  CA  AHE  A  34      15.337  -7.950   6.374  1.00  0.00
ATOM    540  CA  THR A  35      16.415  -4.418   7.456  1.00  0.00
ATOM    554  CA  ASA A  36      13.895  -4.173  10.321  1.00  0.00
ATOM    566  CA  SER A  37      14.420  -7.770  11.568  1.00  0.00
ATOM    577  CA  ILE A  38      18.204  -8.185  11.182  1.00  0.00
ATOM    596  CA  ILE A  39      20.091  -4.967  10.349  1.00  0.00
ATOM    615  CA  THR A  40      18.515  -2.454  12.798  1.00  0.00
END



-- 
C. Balasubramanian
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20141021/3b6c86b8/attachment.html>


More information about the Chimera-users mailing list