[Chimera-users] [chimera-dev] read file by python script and color pdb file with script

[Eric Pettersen]

Hi Sariya,
	Your "check" file contains this (one) line:

67 23

which means that the residue range you generate is ":67-23" which contains nothing.  You want "check" to contain "23 67" so that your residue range becomes ":23-67".

--Eric

                        Eric Pettersen
                        UCSF Computer Graphics Lab
                        http://www.cgl.ucsf.edu

On Apr 21, 2014, at 8:33 PM, Sanjeev Sariya <s.sariya_work at ymail.com> wrote:

> 
> I am having 2 coordinates in check file. I want to take/read them and paint my pdb file loaded in chimera.
> I have chimera in my ~/bin/
> System specs: ubuntu 64 bit, 13.10, 4gb ram
> 
> Below is the command I have used for script-chimera communication
> 
> $ chimera64-1.8.1 --script "y.py check" -- Q6UXT6.pdb
> 
> 
> I am storing values in listu and want to use them for coloring my file loaded.
> 
>     rc("color blue :"+listu[0]+"-"+listu[1])
> 
> This works well, if hard coded
> rc ("color red :55-86")
> 
> I do not get any error. The particular protein length is not colored.
> 
> attached 3 files.
> Kindly suggest, how do I proceed.
> 
>  
> --
> Regards
> Sariya
> 
> <Q6UXT6.pdb><y.py><check>_______________________________________________
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